Variant report
| Variant | rs62278045 |
|---|---|
| Chromosome Location | chr3:160893570-160893571 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:160864038..160866583-chr3:160891018..160893791,2 | MCF-7 | breast: | |
| 2 | chr3:160892333..160895194-chr3:160896982..160899442,2 | MCF-7 | breast: | |
| 3 | chr3:160817475..160820143-chr3:160893422..160895281,2 | MCF-7 | breast: | |
| 4 | chr3:160809965..160812767-chr3:160891424..160893829,2 | MCF-7 | breast: | |
| 5 | chr3:160891061..160893820-chr3:160896787..160898326,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000169255 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10513563 | 0.88[EUR][1000 genomes] |
| rs12630250 | 0.85[EUR][1000 genomes] |
| rs16831760 | 0.88[EUR][1000 genomes] |
| rs16831771 | 0.88[EUR][1000 genomes] |
| rs16831802 | 0.88[EUR][1000 genomes] |
| rs16832063 | 0.83[AFR][1000 genomes] |
| rs16832129 | 0.83[AFR][1000 genomes] |
| rs17405707 | 1.00[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs60768391 | 0.85[EUR][1000 genomes] |
| rs62278044 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs62278046 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62279918 | 0.83[AFR][1000 genomes] |
| rs62280332 | 0.82[EUR][1000 genomes] |
| rs62280340 | 0.85[EUR][1000 genomes] |
| rs62282270 | 0.88[EUR][1000 genomes] |
| rs62282271 | 0.88[EUR][1000 genomes] |
| rs62282275 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931072 | chr3:160669567-161159779 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 98 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:160893000-160894000 | Enhancers | HUVEC | blood vessel |
