Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:161038392..161046344-chr3:161085640..161093564,25	MCF-7	breast:
2	chr3:160817177..160819500-chr3:161037998..161040761,2	MCF-7	breast:
3	chr3:161038719..161041654-chr3:161128838..161130653,2	MCF-7	breast:
4	chr3:160942925..160944989-chr3:161039772..161043116,3	MCF-7	breast:
5	chr3:161024510..161027943-chr3:161039749..161042505,4	MCF-7	breast:
6	chr3:161006869..161011120-chr3:161039575..161043501,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169255	Chromatin interaction
ENSG00000196542	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16832063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16832129	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16832137	0.82[EUR][1000 genomes]
rs16847274	1.00[EUR][1000 genomes]
rs62278032	0.89[AMR][1000 genomes]
rs62278045	0.83[AFR][1000 genomes]
rs62278046	0.83[AFR][1000 genomes]
rs62278054	0.89[AMR][1000 genomes]
rs62278056	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62279886	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62279920	1.00[EUR][1000 genomes]
rs62279922	1.00[EUR][1000 genomes]
rs62279923	1.00[EUR][1000 genomes]
rs62279924	1.00[EUR][1000 genomes]
rs62279925	1.00[EUR][1000 genomes]
rs62279927	1.00[EUR][1000 genomes]
rs62279929	0.84[EUR][1000 genomes]
rs62279930	0.94[EUR][1000 genomes]
rs62279931	0.94[EUR][1000 genomes]
rs62279948	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62279949	0.88[EUR][1000 genomes]
rs62279950	0.88[EUR][1000 genomes]
rs62279954	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62279955	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73162552	1.00[EUR][1000 genomes]
rs73162554	1.00[EUR][1000 genomes]
rs73162598	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv829770	chr3:160989573-161069223	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv4091	chr3:161018540-161063875	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161039800-161041200	Enhancers	HepG2	liver

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