Variant report

Variant	rs73162552
Chromosome Location	chr3:161070700-161070701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160991910..160993878-chr3:161070380..161072426,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16832063	1.00[EUR][1000 genomes]
rs16832129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16832137	0.82[EUR][1000 genomes]
rs16847274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62278032	0.89[AMR][1000 genomes]
rs62278054	0.89[AMR][1000 genomes]
rs62278056	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62279886	0.85[EUR][1000 genomes]
rs62279918	1.00[EUR][1000 genomes]
rs62279920	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279922	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62279930	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62279931	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62279948	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62279949	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62279950	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62279954	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62279955	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73162554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162598	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161058200-161072200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:161059800-161089200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:161064400-161083000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:161068200-161083200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:161068400-161075800	Weak transcription	Stomach Mucosa	stomach
6	chr3:161068400-161083200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:161068800-161079000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:161069400-161072200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:161069600-161075400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:161070400-161075800	Weak transcription	Esophagus	oesophagus
11	chr3:161070600-161071600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:161070600-161071600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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