Variant report

Variant	rs62278032
Chromosome Location	chr3:160871274-160871275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16832063	0.89[AMR][1000 genomes]
rs16832129	0.89[AMR][1000 genomes]
rs16847274	0.89[AMR][1000 genomes]
rs62278054	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62278056	1.00[AMR][1000 genomes]
rs62279886	0.84[AMR][1000 genomes]
rs62279918	0.89[AMR][1000 genomes]
rs62279920	0.84[AMR][1000 genomes]
rs62279922	0.89[AMR][1000 genomes]
rs62279923	0.89[AMR][1000 genomes]
rs62279924	0.89[AMR][1000 genomes]
rs62279925	0.89[AMR][1000 genomes]
rs62279927	0.89[AMR][1000 genomes]
rs62279929	0.89[AMR][1000 genomes]
rs62279930	0.89[AMR][1000 genomes]
rs73162552	0.89[AMR][1000 genomes]
rs73162554	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160850400-160882400	Weak transcription	Ovary	ovary
2	chr3:160862200-160882400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:160867400-160877800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:160867600-160880800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:160868400-160875800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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