Variant report

Variant	rs62278054
Chromosome Location	chr3:160926105-160926106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16832063	0.89[AMR][1000 genomes]
rs16832129	0.89[AMR][1000 genomes]
rs16847274	0.89[AMR][1000 genomes]
rs62278032	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62278056	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62278057	0.81[EUR][1000 genomes]
rs62279886	0.84[AMR][1000 genomes]
rs62279918	0.89[AMR][1000 genomes]
rs62279920	0.84[AMR][1000 genomes]
rs62279922	0.89[AMR][1000 genomes]
rs62279923	0.89[AMR][1000 genomes]
rs62279924	0.89[AMR][1000 genomes]
rs62279925	0.89[AMR][1000 genomes]
rs62279927	0.89[AMR][1000 genomes]
rs62279929	0.89[AMR][1000 genomes]
rs62279930	0.89[AMR][1000 genomes]
rs62279931	0.89[AMR][1000 genomes]
rs62279948	0.89[AMR][1000 genomes]
rs62279949	0.89[AMR][1000 genomes]
rs62279950	0.89[AMR][1000 genomes]
rs73162552	0.89[AMR][1000 genomes]
rs73162554	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1015063	chr3:160918307-161024070	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160915000-160927000	Weak transcription	Aorta	Aorta
2	chr3:160925600-160927000	Enhancers	Brain Germinal Matrix	brain
3	chr3:160926000-160938400	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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