Variant report

Variant	rs16831645
Chromosome Location	chr3:160666224-160666225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10513561	0.87[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap]
rs12487156	0.87[LWK][hapmap];0.88[YRI][hapmap]
rs12488621	0.83[LWK][hapmap]
rs16831850	0.81[LWK][hapmap]
rs16831853	0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs58693796	0.83[AFR][1000 genomes]
rs6441350	0.81[LWK][hapmap]
rs6790705	0.93[YRI][hapmap]
rs6791854	0.82[AFR][1000 genomes]
rs6796168	1.00[LWK][hapmap]
rs6806729	0.91[LWK][hapmap];0.85[MKK][hapmap]
rs73021260	0.83[AMR][1000 genomes]
rs7627500	0.91[LWK][hapmap];0.85[MKK][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160658800-160667400	Weak transcription	Thymus	Thymus
2	chr3:160665800-160666600	Enhancers	Fetal Intestine Large	intestine
3	chr3:160665800-160666800	Enhancers	Liver	Liver
4	chr3:160666000-160666400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:160666000-160666600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr3:160666000-160667400	Enhancers	Fetal Kidney	kidney
7	chr3:160666000-160668000	Enhancers	HepG2	liver
8	chr3:160666200-160666400	Enhancers	Gastric	stomach
9	chr3:160666200-160666400	Enhancers	Left Ventricle	heart
10	chr3:160666200-160666400	Enhancers	Lung	lung
11	chr3:160666200-160666400	Enhancers	Right Atrium	heart
12	chr3:160666200-160666400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr3:160666200-160666600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr3:160666200-160666600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:160666200-160666600	Enhancers	Pancreas	Pancrea
16	chr3:160666200-160666600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr3:160666200-160667000	Enhancers	Psoas Muscle	Psoas
18	chr3:160666200-160667400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:160666200-160669000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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