Variant report

Variant	rs73021260
Chromosome Location	chr3:160798687-160798688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160797537..160800169-chr3:160939583..160942186,2	K562	blood:

Variant related genes	Relation type
ENSG00000271052	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16831645	0.83[AMR][1000 genomes]
rs16831850	0.89[AFR][1000 genomes]
rs16831853	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16831864	0.89[AFR][1000 genomes]
rs6441350	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160780800-160821400	Weak transcription	Fetal Brain Male	brain
2	chr3:160781400-160803400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:160781800-160822000	Weak transcription	Thymus	Thymus
4	chr3:160782000-160799800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:160784200-160799000	Weak transcription	Ovary	ovary
6	chr3:160787000-160822000	Weak transcription	Primary T cells from cord blood	blood
7	chr3:160787200-160818800	Weak transcription	Brain Germinal Matrix	brain
8	chr3:160787600-160803200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:160788000-160799600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:160788000-160799600	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:160788000-160802800	Weak transcription	Fetal Kidney	kidney
12	chr3:160788200-160803400	Weak transcription	Fetal Brain Female	brain
13	chr3:160788600-160803400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:160788600-160807600	Weak transcription	Pancreas	Pancrea
15	chr3:160788800-160799400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr3:160788800-160803400	Weak transcription	Adipose Nuclei	Adipose
17	chr3:160789200-160799600	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:160789200-160803200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:160789600-160818800	Weak transcription	Esophagus	oesophagus
20	chr3:160789800-160802600	Weak transcription	Osteobl	bone
21	chr3:160792800-160803200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:160794800-160800600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr3:160795400-160798800	Weak transcription	Right Ventricle	heart
24	chr3:160796000-160799400	Weak transcription	GM12878-XiMat	blood
25	chr3:160796000-160817400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:160796200-160799400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:160796200-160821800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:160796400-160798800	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr3:160796600-160803400	Weak transcription	Fetal Intestine Large	intestine
30	chr3:160797000-160822000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr3:160797400-160800600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr3:160797600-160817200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:160798200-160800400	Strong transcription	Fetal Stomach	stomach
34	chr3:160798400-160800200	Enhancers	Fetal Heart	heart
35	chr3:160798400-160800400	Enhancers	Left Ventricle	heart
36	chr3:160798400-160800400	Enhancers	Right Atrium	heart
37	chr3:160798600-160803600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr3:160798600-160821800	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links