Variant report

Variant	nsv520415
Chromosome Location	chr11:10159237-10164456
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 182 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:182 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11828592	chr11:10159237-10159238	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs117587289	chr11:10159280-10159281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs181855830	chr11:10159282-10159283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs570752035	chr11:10159297-10159298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs61878655	chr11:10159314-10159315	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs567645158	chr11:10159320-10159321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs144078078	chr11:10159330-10159331	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs535626248	chr11:10159362-10159363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs555657924	chr11:10159440-10159441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs11042642	chr11:10159446-10159447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs575570239	chr11:10159461-10159462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs538135476	chr11:10159483-10159484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs187022663	chr11:10159496-10159497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs200292432	chr11:10159508-10159509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs561277161	chr11:10159549-10159550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs377759573	chr11:10159550-10159551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs79609358	chr11:10159577-10159578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs548503777	chr11:10159583-10159584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs61129164	chr11:10159708-10159709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs191859642	chr11:10159761-10159762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs368304664	chr11:10159768-10159769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs559946317	chr11:10159795-10159796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs530084698	chr11:10159866-10159867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs573894829	chr11:10159867-10159868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs4323860	chr11:10159883-10159884	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs562648644	chr11:10159899-10159900	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs182397668	chr11:10159970-10159971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs148769365	chr11:10160002-10160003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs532469836	chr11:10160049-10160050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs564514411	chr11:10160061-10160062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs200917640	chr11:10160073-10160074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs190181707	chr11:10160086-10160087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs533127365	chr11:10160108-10160109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs547091100	chr11:10160116-10160117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs566593643	chr11:10160117-10160118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs535539321	chr11:10160155-10160156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs576480894	chr11:10160190-10160191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs185150475	chr11:10160199-10160200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs141497359	chr11:10160257-10160258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs551910567	chr11:10160282-10160283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs538572693	chr11:10160338-10160339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs545177986	chr11:10160355-10160356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs200642943	chr11:10160360-10160361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs1135374	chr11:10160368-10160369	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs3180863	chr11:10160409-10160410	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs79026587	chr11:10160416-10160417	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs1135372	chr11:10160417-10160418	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs572284908	chr11:10160420-10160421	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs1057398	chr11:10160451-10160452	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs3178898	chr11:10160515-10160516	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Breast cancer	19432969	CNVD
Alzheimer''s disease	17576883	CNVD
Long-qt syndrome	17576883	CNVD
Emphysema	19352772	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Chordoma	18071362	CNVD
Breast cancer	16608533	CNVD
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Neuroblastoma	21124317	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Schizophrenia	21399695	CNVD
Gastric cancer	16891809	CNVD
Cancer	17160897	CNVD
Multiple myeloma	16616336	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10137200-10161800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10144200-10160800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:10144800-10161400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:10144800-10161400	Weak transcription	HSMM	muscle
5	chr11:10144800-10170400	Weak transcription	Left Ventricle	heart
6	chr11:10145400-10160800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:10145400-10160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:10147800-10160800	Weak transcription	NHEK	skin
9	chr11:10148000-10161000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:10148200-10160800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:10148400-10160800	Weak transcription	Adipose Nuclei	Adipose
12	chr11:10148400-10161400	Weak transcription	NHLF	lung
13	chr11:10148600-10160800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:10148800-10160800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:10149200-10162800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:10152800-10161400	Weak transcription	Ovary	ovary
17	chr11:10155600-10161200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:10156800-10168800	Weak transcription	Fetal Lung	lung
19	chr11:10157000-10161600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:10157000-10177400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:10157200-10160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:10158200-10160800	Weak transcription	Psoas Muscle	Psoas
23	chr11:10158200-10162000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:10160400-10162000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:10160600-10161400	Weak transcription	Right Ventricle	heart
26	chr11:10160800-10161000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:10160800-10161000	Enhancers	Psoas Muscle	Psoas
28	chr11:10160800-10161200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:10160800-10161800	Enhancers	Adipose Nuclei	Adipose
30	chr11:10160800-10162000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:10160800-10162000	Enhancers	Osteobl	bone
32	chr11:10160800-10162400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:10160800-10162400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:10160800-10162400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:10160800-10162400	Enhancers	Hela-S3	cervix
36	chr11:10160800-10162400	Enhancers	HMEC	breast
37	chr11:10160800-10162400	Enhancers	HUVEC	blood vessel
38	chr11:10160800-10162400	Enhancers	NHEK	skin
39	chr11:10160800-10163000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:10160800-10164600	Enhancers	NHDF-Ad	bronchial
41	chr11:10161000-10161200	Active TSS	A549	lung
42	chr11:10161000-10161400	Weak transcription	Psoas Muscle	Psoas
43	chr11:10161000-10161800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:10161000-10161800	Enhancers	NH-A	brain
45	chr11:10161000-10162000	Enhancers	HSMMtube	muscle
46	chr11:10161000-10162200	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr11:10161000-10162200	Enhancers	Muscle Satellite Cultured Cells	--
48	chr11:10161200-10161400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:10161200-10161400	Flanking Active TSS	A549	lung
50	chr11:10161200-10161800	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links