Variant report

Variant	rs1057398
Chromosome Location	chr11:10160451-10160452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520415	chr11:10159237-10164456	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10137200-10161800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10144200-10160800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:10144800-10161400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:10144800-10161400	Weak transcription	HSMM	muscle
5	chr11:10144800-10170400	Weak transcription	Left Ventricle	heart
6	chr11:10145400-10160800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:10145400-10160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:10147800-10160800	Weak transcription	NHEK	skin
9	chr11:10148000-10161000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:10148200-10160800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:10148400-10160800	Weak transcription	Adipose Nuclei	Adipose
12	chr11:10148400-10161400	Weak transcription	NHLF	lung
13	chr11:10148600-10160800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:10148800-10160800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:10149200-10162800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:10152800-10161400	Weak transcription	Ovary	ovary
17	chr11:10155600-10161200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:10156800-10168800	Weak transcription	Fetal Lung	lung
19	chr11:10157000-10161600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:10157000-10177400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:10157200-10160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:10158200-10160800	Weak transcription	Psoas Muscle	Psoas
23	chr11:10158200-10162000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:10160400-10162000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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