Variant report

Variant	nsv520426
Chromosome Location	chr17:15554561-15647723
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1619)
CpG islands
(count:1833)
Chromatin interactive
region (count:21)
LncRNA
region (count:68)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1619 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr17:15554939-15555392	K562	blood:	n/a	n/a
2	ARID3A	chr17:15602736-15603024	HepG2	liver:	n/a	n/a
3	ATF1	chr17:15602817-15603017	K562	blood:	n/a	n/a
4	ATF1	chr17:15554926-15555327	K562	blood:	n/a	n/a
5	ATF2	chr17:15602639-15603127	GM12878	blood:	n/a	n/a
6	ATF3	chr17:15555127-15555288	K562	blood:	n/a	n/a
7	ATF3	chr17:15554934-15555319	K562	blood:	n/a	n/a
8	BACH1	chr17:15602905-15603025	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chr17:15587522-15587574	K562	blood:	n/a	n/a
10	BACH1	chr17:15587367-15587738	H1-hESC	embryonic stem cell:	n/a	n/a
11	BATF	chr17:15602698-15603139	GM12878	blood:	n/a	n/a
12	BCL11A	chr17:15602570-15603218	GM12878	blood:	n/a	n/a
13	BCL3	chr17:15587434-15587831	A549	lung:	n/a	chr17:15587623-15587632
14	BCL3	chr17:15554150-15555483	A549	lung:	n/a	n/a
15	BCL3	chr17:15553870-15555356	A549	lung:	n/a	n/a
16	BHLHE40	chr17:15587520-15587720	GM12878	blood:	n/a	n/a
17	BHLHE40	chr17:15634010-15634038	K562	blood:	n/a	n/a
18	BHLHE40	chr17:15554818-15555284	K562	blood:	n/a	n/a
19	BHLHE40	chr17:15602827-15603100	K562	blood:	n/a	n/a
20	BHLHE40	chr17:15602795-15603168	GM12878	blood:	n/a	n/a
21	BRCA1	chr17:15554914-15555335	Hela-S3	cervix:	n/a	n/a
22	BRCA1	chr17:15602711-15603054	H1-hESC	embryonic stem cell:	n/a	chr17:15602870-15602879
23	BRCA1	chr17:15602716-15603056	HepG2	liver:	n/a	chr17:15602870-15602879
24	BRCA1	chr17:15602639-15603141	Hela-S3	cervix:	n/a	chr17:15602870-15602879
25	BRCA1	chr17:15562808-15563384	Hela-S3	cervix:	n/a	n/a
26	BRCA1	chr17:15602708-15603099	GM12878	blood:	n/a	chr17:15602870-15602879
27	BRCA1	chr17:15587530-15587649	Hela-S3	cervix:	n/a	n/a
28	CBX3	chr17:15619988-15620697	K562	blood:	n/a	n/a
29	CBX3	chr17:15554835-15555365	K562	blood:	n/a	n/a
30	CBX3	chr17:15620100-15620529	K562	blood:	n/a	n/a
31	CBX3	chr17:15602574-15603183	K562	blood:	n/a	n/a
32	CBX3	chr17:15612211-15612593	K562	blood:	n/a	n/a
33	CCNT2	chr17:15554641-15555276	K562	blood:	n/a	n/a
34	CEBPB	chr17:15562766-15563340	Hela-S3	cervix:	n/a	n/a
35	CEBPB	chr17:15554910-15555156	K562	blood:	n/a	n/a
36	CEBPB	chr17:15622848-15623158	A549	lung:	n/a	n/a
37	CEBPB	chr17:15577101-15577343	K562	blood:	n/a	chr17:15577231-15577242 chr17:15577231-15577244
38	CEBPB	chr17:15554851-15555306	MCF-7	breast:	n/a	n/a
39	CEBPB	chr17:15577092-15577369	IMR90	lung:	n/a	chr17:15577231-15577242 chr17:15577231-15577244
40	CEBPB	chr17:15590473-15590661	HepG2	liver:	n/a	n/a
41	CEBPB	chr17:15643479-15643633	Hela-S3	cervix:	n/a	n/a
42	CEBPB	chr17:15620705-15620913	A549	lung:	n/a	n/a
43	CEBPB	chr17:15554781-15555332	Hela-S3	cervix:	n/a	n/a
44	CEBPB	chr17:15554838-15555221	K562	blood:	n/a	n/a
45	CEBPB	chr17:15588349-15588353	IMR90	lung:	n/a	n/a
46	CEBPB	chr17:15562915-15563274	ECC-1	luminal epithelium:	n/a	n/a
47	CEBPB	chr17:15610713-15610738	A549	lung:	n/a	n/a
48	CEBPB	chr17:15562899-15563338	ECC-1	luminal epithelium:	n/a	n/a
49	CEBPB	chr17:15622863-15623063	HepG2	liver:	n/a	n/a
50	CEBPB	chr17:15554863-15555257	K562	blood:	n/a	n/a

(count:1833 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:15646415-15646465	GM12891	blood:	n/a
2	chr17:15603984-15604034	HPAEpiC	pulmonary alveolar:	n/a
3	chr17:15555115-15555165	NHBE	bronchial:	n/a
4	chr17:15646415-15646465	GM12891	blood:	n/a
5	chr17:15603984-15604034	HPAEpiC	pulmonary alveolar:	n/a
6	chr17:15555115-15555165	NHBE	bronchial:	n/a
7	chr17:15554603-15554653	T-47D	breast:	n/a
8	chr17:15602873-15602923	HCT-116	colon:	n/a
9	chr17:15608443-15608493	HepG2	liver:	n/a
10	chr17:15607775-15607825	GM12878	blood:	n/a
11	chr17:15586426-15586476	HEEpiC	esophagus:	n/a
12	chr17:15587147-15587197	HNPCEpiC	eye:	n/a
13	chr17:15620678-15620728	HNPCEpiC	eye:	n/a
14	chr17:15634511-15634561	PrEC	prostate:	n/a
15	chr17:15635401-15635451	AG09319	gingival:	n/a
16	chr17:15602157-15602207	CMK	blood:	n/a
17	chr17:15586426-15586476	K562	blood:	n/a
18	chr17:15608091-15608141	H1-hESC	embryonic stem cell:	embryo
19	chr17:15600659-15600709	HNPCEpiC	eye:	n/a
20	chr17:15634721-15634771	BJ	skin:	n/a
21	chr17:15602714-15602764	HRE	kidney:	n/a
22	chr17:15607775-15607825	AG09309	skin:	n/a
23	chr17:15646415-15646465	H1-hESC	embryonic stem cell:	embryo
24	chr17:15608443-15608493	AoSMC	blood vessel:	n/a
25	chr17:15602714-15602764	K562	blood:	n/a
26	chr17:15635468-15635518	HNPCEpiC	eye:	n/a
27	chr17:15586170-15586220	HEK293	kidney:	embryo
28	chr17:15607775-15607825	HRCEpiC	kidney:	n/a
29	chr17:15635468-15635518	HCF	heart:	n/a
30	chr17:15635431-15635481	ProgFib	skin:	n/a
31	chr17:15603030-15603080	HCPEpiC	choroid plexus:	n/a
32	chr17:15587279-15587329	HPAEpiC	pulmonary alveolar:	n/a
33	chr17:15608033-15608083	HL-60	blood:	n/a
34	chr17:15600659-15600709	AG04449	skin:	fetal
35	chr17:15555115-15555165	GM12891	blood:	n/a
36	chr17:15634721-15634771	ovcar-3	ovarian:	n/a
37	chr17:15602873-15602923	GM12891	blood:	n/a
38	chr17:15587147-15587197	GM06990	blood:	n/a
39	chr17:15635376-15635426	HRCEpiC	kidney:	n/a
40	chr17:15635401-15635451	MCF10A-Er-Src	breast:	n/a
41	chr17:15608443-15608493	AG09319	gingival:	n/a
42	chr17:15635431-15635481	AoSMC	blood vessel:	n/a
43	chr17:15608091-15608141	GM06990	blood:	n/a
44	chr17:15602714-15602764	BE2_C	brain:	n/a
45	chr17:15634721-15634771	ECC-1	luminal epithelium:	n/a
46	chr17:15603984-15604034	Jurkat	blood:	n/a
47	chr17:15608091-15608141	AG04449	skin:	fetal
48	chr17:15634721-15634771	HIPEpiC	eye:	n/a
49	chr17:15606456-15606506	GM19239	blood:	n/a
50	chr17:15646415-15646465	HCF	heart:	n/a

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:15552019..15554730-chr17:16119203..16121978,2	MCF-7	breast:
2	chr17:15561055..15565103-chr17:15565320..15567687,3	MCF-7	breast:
3	chr17:15603099..15603617-chr17:18585233..18585750,2	HCT-116	colon:
4	chr17:15551872..15554786-chr17:16116224..16118866,3	MCF-7	breast:
5	chr17:15565672..15568468-chr17:15583905..15586616,2	MCF-7	breast:
6	chr17:15582137..15583945-chr17:15586739..15588630,2	MCF-7	breast:
7	chr17:15553921..15556547-chr17:15556624..15558829,2	K562	blood:
8	chr1:150551989..150552685-chr17:15554385..15554952,2	MCF-7	breast:
9	chr17:15160810..15162326-chr17:15564040..15566649,2	K562	blood:
10	chr17:15561055..15565103-chr17:15565320..15567687,3	MCF-7	breast:
11	chr17:15554505..15555485-chr7:12250755..12251548,2	Hela-S3	cervix:
12	chr17:1303001..1303723-chr17:15554504..15555037,2	Hela-S3	cervix:
13	chr17:15563102..15563727-chr17:15973385..15973964,2	MCF-7	breast:
14	chr17:15555196..15556875-chr17:15562176..15564992,2	K562	blood:
15	chr17:15646677..15648283-chr17:15650856..15653224,2	K562	blood:
16	chr17:15553921..15556544-chr17:15556861..15558829,2	K562	blood:
17	chr1:145610525..145611182-chr17:15554605..15555423,2	Hela-S3	cervix:
18	chr17:15081140..15081829-chr17:15562872..15563684,2	MCF-7	breast:
19	chr17:15553842..15556755-chr17:15901183..15904132,3	MCF-7	breast:
20	chr17:15553526..15556124-chr17:15902249..15904435,2	MCF-7	breast:
21	chr17:15555196..15556875-chr17:15562176..15564992,2	K562	blood:

(count:68 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF286A-7	chr17:15603477-15603901	NONHSAT145853
2	lnc-RP11-385D13.1.1-1	chr17:15584179-15584267	NONHSAT145840
3	lnc-RP11-385D13.1.1-1	chr17:15584179-15584267	NONHSAT145844
4	lnc-TRIM16-1	chr17:15646917-15647105	ENSG00000233002.2
5	lnc-RP11-385D13.1.1-1	chr17:15586168-15586265	NONHSAT145847
6	lnc-RP11-385D13.1.1-1	chr17:15586350-15586471	NONHSAT145845
7	lnc-RP11-385D13.1.1-1	chr17:15557576-15557745	NONHSAT145841
8	lnc-ZNF286A-7	chr17:15637356-15637402	NONHSAT145856
9	lnc-RP11-385D13.1.1-1	chr17:15586168-15586265	NONHSAT145840
10	lnc-RP11-385D13.1.1-1	chr17:15584179-15584267	NONHSAT145841
11	lnc-RP11-385D13.1.1-1	chr17:15562116-15562190	NONHSAT145840
12	lnc-TRIM16-1	chr17:15646917-15647113	ENSG00000233002.2
13	lnc-ZNF286A-7	chr17:15638018-15638177	NONHSAT145856
14	lnc-ZNF286A-7	chr17:15637159-15637402	NONHSAT145859
15	lnc-ZNF286A-7	chr17:15604466-15604544	NONHSAT145853
16	lnc-RP11-385D13.1.1-1	chr17:15586168-15586265	NONHSAT145844
17	lnc-RP11-385D13.1.1-1	chr17:15584179-15584267	NONHSAT145845
18	lnc-TBC1D26-1	chr17:15620599-15620627	NONHSAT145855
19	lnc-ZNF286A-7	chr17:15604466-15604614	NONHSAT145848
20	lnc-RP11-385D13.1.1-1	chr17:15586350-15586471	NONHSAT145841
21	lnc-ZNF286A-7	chr17:15603449-15603991	NONHSAT145850
22	lnc-RP11-385D13.1.1-1	chr17:15587510-15587580	NONHSAT145840
23	lnc-RP11-385D13.1.1-1	chr17:15586168-15586265	NONHSAT145841
24	lnc-ZNF286A-7	chr17:15603054-15603091	NONHSAT145850
25	lnc-RP11-385D13.1.1-1	chr17:15586350-15586471	NONHSAT145840
26	lnc-TRIM16-1	chr17:15639776-15639863	ENSG00000233002.2
27	lnc-ZNF286A-7	chr17:15638018-15638351	NONHSAT145859
28	lnc-ZNF286A-7	chr17:15602895-15603091	NONHSAT145849
29	lnc-ZNF286A-7	chr17:15603362-15603853	NONHSAT145849
30	lnc-ZNF286A-7	chr17:15637028-15637251	NONHSAT145856
31	lnc-RP11-385D13.1.1-1	chr17:15580945-15581035	NONHSAT145845
32	lnc-RP11-385D13.1.1-1	chr17:15586350-15586471	NONHSAT145844
33	lnc-TRIM16-1	chr17:15643410-15648034	NONHSAT145863
34	lnc-RP11-385D13.1.1-1	chr17:15584402-15584536	NONHSAT145846
35	lnc-RP11-385D13.1.1-1	chr17:15587510-15587611	NONHSAT145838
36	lnc-RP11-385D13.1.1-1	chr17:15580889-15580996	NONHSAT145844
37	lnc-RP11-385D13.1.1-1	chr17:15586350-15586471	NONHSAT145838
38	lnc-RP11-385D13.1.1-1	chr17:15584179-15584267	NONHSAT145843
39	lnc-ZNF286A-7	chr17:15635571-15635698	NONHSAT145856
40	lnc-TRIM16-1	chr17:15641817-15642103	ENSG00000233002.2
41	lnc-RP11-385D13.1.1-1	chr17:15587510-15587625	NONHSAT145847
42	lnc-RP11-385D13.1.1-1	chr17:15587510-15587613	NONHSAT145844
43	lnc-TRIM16-1	chr17:15638337-15638689	ENSG00000233002.2
44	lnc-RP11-385D13.1.1-1	chr17:15587510-15587615	NONHSAT145843
45	lnc-RP11-385D13.1.1-1	chr17:15584179-15584267	NONHSAT145838
46	lnc-RP11-385D13.1.1-1	chr17:15580489-15580591	NONHSAT145843
47	lnc-ZNF286A-1	chr17:15557758-15557803	ENSG00000266261.1
48	lnc-RP11-385D13.1.1-1	chr17:15586350-15586471	NONHSAT145846
49	lnc-ZNF286A-1	chr17:15554904-15555428	ENSG00000266261.1
50	lnc-ZNF286A-7	chr17:15603449-15603680	NONHSAT145848

No data

Variant related genes	Relation type
ENSG00000233002	TF binding region
ENSG00000187607	TF binding region
UBE2SP1	TF binding region
TRIM16	TF binding region
TBC1D26	TF binding region
ENSG00000251537	TF binding region
ZNF29P	TF binding region
ENSG00000266261	TF binding region
ZNF286A	TF binding region
ENSG00000233002	CpG island
ENSG00000187607	CpG island
UBE2SP1	CpG island
TRIM16	CpG island
TBC1D26	CpG island
ENSG00000251537	CpG island
ZNF29P	CpG island
ENSG00000266261	CpG island
ZNF286A	CpG island
ENSG00000221926	chromatin interactions
ENSG00000141027	chromatin interactions
ENSG00000251537	chromatin interactions
ENSG00000106460	chromatin interactions
ENSG00000249459	chromatin interactions
ENSG00000186141	chromatin interactions
ENSG00000266261	chromatin interactions
ENSG00000214941	chromatin interactions
ENSG00000121848	chromatin interactions
ENSG00000108953	chromatin interactions
ENSG00000267227	chromatin interactions
ENSG00000108474	chromatin interactions
ENSG00000011295	chromatin interactions
ENSG00000143384	chromatin interactions
ENSG00000233002	chromatin interactions
PFKFB2	miRNA target sites
PHF17	miRNA target sites

Extended variants
information (count: 3407 )
Associated
traits (count: 128 )

Variant overlapped rSNPs/rCNVs (count:3407 , 50 per page) page: 1 2 3 4 5 6 7 ... 69

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2074890	chr17:15554561-15554562	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs138524166	chr17:15554572-15554573	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
3	rs148027903	chr17:15554604-15554605	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
4	rs140938167	chr17:15554605-15554606	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
5	rs144663766	chr17:15554608-15554609	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
6	rs371753308	chr17:15554613-15554614	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
7	rs534484297	chr17:15554623-15554624	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
8	rs116554938	chr17:15554698-15554699	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
9	rs141481228	chr17:15554727-15554728	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
10	rs150907471	chr17:15554735-15554736	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
11	rs377452311	chr17:15554743-15554744	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
12	rs188307419	chr17:15554744-15554745	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
13	rs138309375	chr17:15554759-15554760	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
14	rs149620739	chr17:15554760-15554761	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
15	rs200484084	chr17:15554773-15554774	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
16	rs140413277	chr17:15554781-15554782	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
17	rs199499021	chr17:15554791-15554792	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
18	rs61738421	chr17:15554792-15554793	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs555310958	chr17:15554836-15554837	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
20	rs371058709	chr17:15554893-15554894	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
21	rs374112724	chr17:15554928-15554929	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
22	rs7215772	chr17:15554955-15554956	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs370573399	chr17:15554957-15554958	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
24	rs191354544	chr17:15555017-15555018	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
25	rs117315966	chr17:15555027-15555028	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
26	rs577988950	chr17:15555089-15555090	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
27	rs143578167	chr17:15555093-15555094	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
28	rs374969876	chr17:15555094-15555095	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
29	rs148039868	chr17:15555097-15555098	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
30	rs573695780	chr17:15555159-15555160	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
31	rs542717596	chr17:15555201-15555202	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
32	rs182203117	chr17:15555224-15555225	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
33	rs576251856	chr17:15555271-15555272	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
34	rs545162837	chr17:15555288-15555289	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
35	rs186764034	chr17:15555326-15555327	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
36	rs78490052	chr17:15555345-15555346	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
37	rs192433614	chr17:15555356-15555357	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
38	rs527956286	chr17:15555392-15555393	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
39	rs547519555	chr17:15555412-15555413	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
40	rs71358352	chr17:15555449-15555450	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs561324539	chr17:15555462-15555463	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs569106109	chr17:15555464-15555465	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs200450452	chr17:15555465-15555466	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs79285179	chr17:15555469-15555470	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs75601713	chr17:15555480-15555481	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
46	rs571184718	chr17:15555504-15555505	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
47	rs570133085	chr17:15555572-15555573	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs367660014	chr17:15555587-15555588	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs111385942	chr17:15555622-15555623	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs371423949	chr17:15555633-15555634	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:128)

Disease	PMID	Source
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	17603634	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	19435819	CNVD
Non-small cell lung cancer	19010865	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Hepatocellular carcinoma	18803288	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Esophageal adenocarcinoma	18519675	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Chordoma	21602918	CNVD
Miller-Dieker syndrome	22283845	CNVD
Non-syndromic sensorineural hearing loss	17457615	CNVD
Cancer	22429812	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Ewing''s sarcoma	21437220	CNVD
Follicular lymphoma	19010834	CNVD
Colorectal cancer	20709793	CNVD
Acute myeloid leukemia	16864856	CNVD
Endometrial cancer	22040021	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Breast cancer	22028636	CNVD
Breast cancer	20837533	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
colon cancer	17210682	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Chronic lymphocytic leukemia	17971485	CNVD
Basal cell lymphoma	17170743	CNVD
Breast cancer	16461572	CNVD
Colorectal cancer	16272173	CNVD
Follicular lymphoma	17170743	CNVD
Human rectal carcinomas	16397240	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Moyamoya disease	22323933	CNVD
small cell lung cancer	20016488	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Myelodysplastic syndrome	21251322	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20724749	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Acute myeloid leukemia	17237825	CNVD
Colorectal cancer	21645411	CNVD
HIV/AIDS	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
HIV/AIDS	17953491	CNVD
HIV/AIDS	20877625	CNVD
Immune disease	21076436	CNVD
Rheumatoid arthritis	17953491	CNVD
Type 1 diabetes	17953491	CNVD
HIV/AIDS	15637236	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Ovarian cancer	21781307	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Neurofibromatosis	18196300	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Multiple myeloma	16616336	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21509527	CNVD
Pancreatic cancer	21811587	CNVD
Autism	17322880	CNVD
Hereditary neuropathy with liability to pressure palsy	19521722	CNVD
Schizophrenia	19571808	CNVD
Schizophrenia	19955444	CNVD
Charcot-marie-tooth disease	18787571	CNVD
Breast cancer	20409316	CNVD
Autism	18414403	CNVD
Breast cancer	17001317	CNVD
Rhabdomyosarcoma	16790082	CNVD
Myelofibrosis	22110671	CNVD
Peripheral neuropathy	21193943	CNVD
Schizophrenia	20587603	CNVD
Schizophrenia	22958593	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Ovarian cancer	20844748	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Charcot-marie-tooth disease	16463004	CNVD
Osteosarcoma	22292074	CNVD
Charcot	16760730	CNVD
Mental retardation	17901693	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	21858162	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17142309	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Autism	22102821	CNVD
Gastric cancer	18160780	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2041 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15549600-15554800	Weak transcription	GM12878-XiMat	blood
2	chr17:15550000-15554600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr17:15551600-15555000	Active TSS	Psoas Muscle	Psoas
4	chr17:15551600-15555000	Flanking Active TSS	Hela-S3	cervix
5	chr17:15552200-15555200	Active TSS	Stomach Mucosa	stomach
6	chr17:15552200-15564600	Weak transcription	HepG2	liver
7	chr17:15552400-15555600	Active TSS	A549	lung
8	chr17:15552400-15555600	Active TSS	HSMM	muscle
9	chr17:15552400-15555600	Active TSS	HSMMtube	muscle
10	chr17:15553000-15554600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr17:15553000-15554600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr17:15553000-15554600	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr17:15553000-15555000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr17:15553000-15555000	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr17:15553000-15555000	Flanking Active TSS	HMEC	breast
16	chr17:15553000-15555400	Flanking Active TSS	HUVEC	blood vessel
17	chr17:15553000-15555600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr17:15553000-15555600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
19	chr17:15553000-15555600	Flanking Active TSS	Osteobl	bone
20	chr17:15553200-15554800	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr17:15553200-15555000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr17:15553200-15555000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr17:15553200-15555000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr17:15553200-15555400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr17:15553200-15555400	Flanking Active TSS	Fetal Lung	lung
26	chr17:15553200-15555400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
27	chr17:15553200-15555600	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr17:15553400-15554600	Flanking Active TSS	Colon Smooth Muscle	Colon
29	chr17:15553400-15555000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr17:15553400-15555000	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr17:15553400-15555200	Active TSS	Fetal Intestine Small	intestine
32	chr17:15553400-15555200	Active TSS	NHEK	skin
33	chr17:15553400-15555600	Active TSS	Aorta	Aorta
34	chr17:15553600-15554600	Enhancers	Liver	Liver
35	chr17:15553600-15554800	Enhancers	Primary hematopoietic stem cells	blood
36	chr17:15553600-15555000	Active TSS	Sigmoid Colon	Sigmoid Colon
37	chr17:15553600-15555200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr17:15553600-15555400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr17:15553600-15555400	Active TSS	Duodenum Mucosa	Duodenum
40	chr17:15553600-15555400	Active TSS	Fetal Intestine Large	intestine
41	chr17:15553600-15555600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr17:15553600-15555600	Active TSS	NHDF-Ad	bronchial
43	chr17:15553800-15555000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr17:15553800-15555000	Flanking Active TSS	Brain Cingulate Gyrus	brain
45	chr17:15553800-15555200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr17:15553800-15555400	Flanking Active TSS	Brain Hippocampus Middle	brain
47	chr17:15554000-15554600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr17:15554000-15554600	Flanking Active TSS	Fetal Stomach	stomach
49	chr17:15554000-15554600	Flanking Active TSS	Left Ventricle	heart
50	chr17:15554000-15554600	Flanking Active TSS	Rectal Smooth Muscle	rectum

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