Variant report

Variant	nsv523664
Chromosome Location	chr6:163858237-163907885
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:410)
CpG islands
(count:122)
Chromatin interactive
region (count:60)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:410 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:163867523-163867988	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:163881805-163882116	K562	blood:	n/a	n/a
3	ARID3A	chr6:163881073-163881257	K562	blood:	n/a	n/a
4	ARID3A	chr6:163905970-163906808	K562	blood:	n/a	n/a
5	ARID3A	chr6:163888944-163889106	K562	blood:	n/a	chr6:163889025-163889041 chr6:163889024-163889040
6	ATF1	chr6:163906324-163906915	K562	blood:	n/a	n/a
7	ATF3	chr6:163906484-163906913	K562	blood:	n/a	n/a
8	BACH1	chr6:163888159-163888513	K562	blood:	n/a	n/a
9	BACH1	chr6:163906318-163906718	K562	blood:	n/a	n/a
10	BHLHE40	chr6:163882837-163883135	GM12878	blood:	n/a	chr6:163883040-163883049 chr6:163883034-163883055 chr6:163883041-163883050 chr6:163883040-163883049
11	BHLHE40	chr6:163884248-163884271	K562	blood:	n/a	n/a
12	CBX3	chr6:163891594-163892059	K562	blood:	n/a	n/a
13	CBX3	chr6:163891605-163892012	K562	blood:	n/a	n/a
14	CBX3	chr6:163906403-163906901	K562	blood:	n/a	n/a
15	CCNT2	chr6:163860803-163861003	K562	blood:	n/a	n/a
16	CEBPB	chr6:163906588-163906876	A549	lung:	n/a	chr6:163906744-163906755
17	CEBPB	chr6:163906540-163906933	Hela-S3	cervix:	n/a	chr6:163906744-163906755
18	CEBPB	chr6:163878937-163879278	A549	lung:	n/a	n/a
19	CEBPB	chr6:163906338-163906940	K562	blood:	n/a	chr6:163906744-163906755
20	CEBPB	chr6:163905279-163905296	K562	blood:	n/a	n/a
21	CEBPB	chr6:163878762-163879476	IMR90	lung:	n/a	n/a
22	CEBPB	chr6:163906505-163906944	K562	blood:	n/a	chr6:163906744-163906755
23	CEBPB	chr6:163888181-163888381	HepG2	liver:	n/a	chr6:163888274-163888285
24	CEBPB	chr6:163906557-163906931	IMR90	lung:	n/a	chr6:163906744-163906755
25	CEBPB	chr6:163906563-163906926	HepG2	liver:	n/a	chr6:163906744-163906755
26	CEBPB	chr6:163864430-163864636	K562	blood:	n/a	n/a
27	CEBPB	chr6:163864424-163864704	H1-hESC	embryonic stem cell:	n/a	n/a
28	CEBPB	chr6:163906580-163906845	K562	blood:	n/a	chr6:163906744-163906755
29	CEBPB	chr6:163861955-163862281	K562	blood:	n/a	chr6:163862215-163862232
30	CHD1	chr6:163890764-163890820	GM12878	blood:	n/a	n/a
31	CTCF	chr6:163879020-163879170	HVMF	connective:	n/a	n/a
32	CTCF	chr6:163879040-163879190	AG04450	lung:	n/a	n/a
33	CTCF	chr6:163879000-163879150	AG04449	skin:	n/a	n/a
34	CTCF	chr6:163865120-163865270	Caco-2	colon:	n/a	n/a
35	CTCF	chr6:163865140-163865290	AG04449	skin:	n/a	n/a
36	CTCF	chr6:163864989-163865384	K562	blood:	n/a	n/a
37	CTCF	chr6:163865140-163865290	AG04450	lung:	n/a	n/a
38	CTCF	chr6:163879040-163879190	HCFaa	heart:	n/a	n/a
39	CTCF	chr6:163865258-163865269	Kidney_OC	kidney:	n/a	n/a
40	CTCF	chr6:163895869-163895923	GM13976	blood:	n/a	n/a
41	CTCF	chr6:163879080-163879230	HMF	breast:	n/a	n/a
42	CTCF	chr6:163879060-163879210	RPTEC	kidney:	n/a	n/a
43	CTCF	chr6:163865140-163865290	K562	blood:	n/a	n/a
44	CTCF	chr6:163879040-163879190	AG09309	skin:	n/a	n/a
45	CTCF	chr6:163865200-163865350	HVMF	connective:	n/a	n/a
46	CTCF	chr6:163865189-163865274	HepG2	liver:	n/a	n/a
47	CTCF	chr6:163865160-163865310	NHEK	skin:	n/a	n/a
48	CTCF	chr6:163865188-163865256	Kidney_OC	kidney:	n/a	n/a
49	CTCF	chr6:163864920-163865210	HEK293	kidney:	n/a	n/a
50	CTCF	chr6:163865180-163865330	WERI-Rb-1	eye:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:163880196-163880246	LNCaP	prostate:	n/a
2	chr6:163862445-163862495	GM06990	blood:	n/a
3	chr6:163862445-163862495	T-47D	breast:	n/a
4	chr6:163880196-163880246	Jurkat	blood:	n/a
5	chr6:163862445-163862495	CMK	blood:	n/a
6	chr6:163862445-163862495	ProgFib	skin:	n/a
7	chr6:163862445-163862495	IMR90	lung:	fetal
8	chr6:163862445-163862495	GM12892	blood:	n/a
9	chr6:163880196-163880246	T-47D	breast:	n/a
10	chr6:163880196-163880246	SKMC	muscle:	n/a
11	chr6:163880196-163880246	SK-N-MC	brain:	n/a
12	chr6:163880196-163880246	U87	brain:	n/a
13	chr6:163862445-163862495	SK-N-SH_RA	brain:	n/a
14	chr6:163880196-163880246	NB4	blood:	n/a
15	chr6:163862445-163862495	Hela-S3	cervix:	n/a
16	chr6:163880196-163880246	NHBE	bronchial:	n/a
17	chr6:163880196-163880246	A549	lung:	n/a
18	chr6:163862445-163862495	HUVEC	blood vessel:	n/a
19	chr6:163862445-163862495	HMEC	breast:	n/a
20	chr6:163862445-163862495	HEK293	kidney:	embryo
21	chr6:163880196-163880246	PrEC	prostate:	n/a
22	chr6:163862445-163862495	ECC-1	luminal epithelium:	n/a
23	chr6:163880196-163880246	MCF10A-Er-Src	breast:	n/a
24	chr6:163880196-163880246	HCT-116	colon:	n/a
25	chr6:163880196-163880246	GM12878	blood:	n/a
26	chr6:163862445-163862495	H1-hESC	embryonic stem cell:	embryo
27	chr6:163862445-163862495	HCT-116	colon:	n/a
28	chr6:163862445-163862495	SK-N-MC	brain:	n/a
29	chr6:163880196-163880246	ovcar-3	ovarian:	n/a
30	chr6:163862445-163862495	HL-60	blood:	n/a
31	chr6:163862445-163862495	AG09319	gingival:	n/a
32	chr6:163862445-163862495	LNCaP	prostate:	n/a
33	chr6:163862445-163862495	HEEpiC	esophagus:	n/a
34	chr6:163880196-163880246	RPTEC	kidney:	n/a
35	chr6:163862445-163862495	HRE	kidney:	n/a
36	chr6:163862445-163862495	HRCEpiC	kidney:	n/a
37	chr6:163880196-163880246	GM19239	blood:	n/a
38	chr6:163880196-163880246	HNPCEpiC	eye:	n/a
39	chr6:163880196-163880246	PANC-1	pancreas:	n/a
40	chr6:163862445-163862495	MCF-7	breast:	n/a
41	chr6:163862445-163862495	AG04449	skin:	fetal
42	chr6:163880196-163880246	BE2_C	brain:	n/a
43	chr6:163862445-163862495	Hepatocyte	liver:	n/a
44	chr6:163880196-163880246	AG09309	skin:	n/a
45	chr6:163862445-163862495	Jurkat	blood:	n/a
46	chr6:163862445-163862495	Caco-2	colon:	n/a
47	chr6:163880196-163880246	HepG2	liver:	n/a
48	chr6:163880196-163880246	HMEC	breast:	n/a
49	chr6:163862445-163862495	HCF	heart:	n/a
50	chr6:163880196-163880246	ECC-1	luminal epithelium:	n/a

(count:60 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:163860977..163864792-chr6:163871306..163876031,5	K562	blood:
2	chr6:163890293..163893385-chr6:163894823..163897543,3	K562	blood:
3	chr6:163862181..163864107-chr6:163864810..163866525,2	K562	blood:
4	chr6:163870248..163872989-chr6:163874966..163878532,3	K562	blood:
5	chr6:163896776..163899468-chr6:163904713..163906625,2	K562	blood:
6	chr6:163882705..163885341-chr6:163888682..163891213,3	K562	blood:
7	chr6:163882705..163885341-chr6:163888682..163891213,3	K562	blood:
8	chr6:163867918..163871550-chr6:163871903..163874909,5	K562	blood:
9	chr6:163881425..163884051-chr6:164006654..164009076,2	K562	blood:
10	chr6:163860977..163864792-chr6:163871306..163876031,5	K562	blood:
11	chr6:163862457..163864512-chr6:163873673..163876031,2	K562	blood:
12	chr6:163887956..163890806-chr6:163903233..163905754,2	K562	blood:
13	chr6:163893040..163896029-chr6:163899899..163902855,3	K562	blood:
14	chr6:163870026..163872453-chr6:163876589..163878532,2	K562	blood:
15	chr6:163890293..163893385-chr6:163894823..163897543,3	K562	blood:
16	chr6:163896776..163899468-chr6:163904713..163906625,2	K562	blood:
17	chr6:163835241..163837515-chr6:163904579..163906300,2	K562	blood:
18	chr6:163835043..163836846-chr6:163863804..163865596,2	K562	blood:
19	chr6:163866441..163869284-chr6:163870022..163872940,2	MCF-7	breast:
20	chr6:163892454..163895409-chr6:163896616..163898931,2	K562	blood:
21	chr6:163860459..163862535-chr6:163862802..163865105,2	K562	blood:
22	chr6:163878553..163880705-chr6:163884842..163887651,2	MCF-7	breast:
23	chr6:163906576..163909444-chr6:163912230..163915189,4	K562	blood:
24	chr6:163887956..163890806-chr6:163903233..163905754,2	K562	blood:
25	chr6:163849473..163851849-chr6:163857419..163859004,2	K562	blood:
26	chr6:163906959..163909795-chr6:163909978..163912213,2	K562	blood:
27	chr6:163878253..163881131-chr6:163881459..163884552,3	K562	blood:
28	chr6:163862181..163864107-chr6:163864810..163866525,2	K562	blood:
29	chr6:163852487..163854281-chr6:163861213..163863145,2	K562	blood:
30	chr6:163855274..163857032-chr6:163897787..163900423,2	K562	blood:
31	chr6:163860459..163862535-chr6:163862802..163865105,2	K562	blood:
32	chr6:163893040..163896029-chr6:163899899..163902855,3	K562	blood:
33	chr6:163834856..163837715-chr6:163860062..163862807,3	K562	blood:
34	chr6:163840085..163841837-chr6:163858856..163861674,2	MCF-7	breast:
35	chr6:163870026..163872453-chr6:163876589..163878532,2	K562	blood:
36	chr6:163840864..163843794-chr6:163863418..163865440,3	K562	blood:
37	chr6:163896082..163898816-chr6:163902076..163903998,2	K562	blood:
38	chr6:163863925..163866633-chr6:163876893..163879204,2	MCF-7	breast:
39	chr6:163852314..163854310-chr6:163857070..163858780,2	K562	blood:
40	chr6:163878253..163881131-chr6:163881459..163884552,3	K562	blood:
41	chr6:163907164..163909341-chr6:163918489..163921263,2	K562	blood:
42	chr6:163906185..163908152-chr6:163909276..163911909,3	MCF-7	breast:
43	chr6:163873882..163876794-chr6:163877974..163880683,2	K562	blood:
44	chr6:163866441..163869284-chr6:163870022..163872940,2	MCF-7	breast:
45	chr6:163896082..163898816-chr6:163902076..163903998,2	K562	blood:
46	chr6:163833543..163837266-chr6:163857952..163863749,8	K562	blood:
47	chr6:163867918..163871550-chr6:163871903..163874909,5	K562	blood:
48	chr6:163879929..163881986-chr6:163883834..163886314,2	K562	blood:
49	chr6:163844662..163847045-chr6:163859401..163861276,2	MCF-7	breast:
50	chr6:163862457..163864512-chr6:163873673..163876031,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PACRG-3	chr6:163898510-163899785	NONHSAT115964
2	lnc-PACRG-2	chr6:163894452-163895192	NONHSAT115963

No data

Variant related genes	Relation type
QKI	TF binding region
QKI	CpG island
ENSG00000270419	chromatin interactions
ENSG00000112531	chromatin interactions

Extended variants
information (count: 1927 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:1927 , 50 per page) page: 1 2 3 4 5 6 7 ... 39

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs803612	chr6:163858237-163858238	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs551552473	chr6:163858256-163858257	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs571510286	chr6:163858297-163858298	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs537305045	chr6:163858310-163858311	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs74299417	chr6:163858316-163858317	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs575642804	chr6:163858321-163858322	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs183408377	chr6:163858385-163858386	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs536268629	chr6:163858401-163858402	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs143988332	chr6:163858426-163858427	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs566541449	chr6:163858487-163858488	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs538401307	chr6:163858512-163858513	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs558319280	chr6:163858574-163858575	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs577825859	chr6:163858678-163858679	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs117422928	chr6:163858764-163858765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs803613	chr6:163858781-163858782	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs573661370	chr6:163858796-163858797	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs140635910	chr6:163858815-163858816	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs559513468	chr6:163858900-163858901	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs144483758	chr6:163858910-163858911	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs138336857	chr6:163858916-163858917	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs187371594	chr6:163858918-163858919	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs398110909	chr6:163858922-163858923	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs565028891	chr6:163858983-163858984	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs783138	chr6:163858988-163858989	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs550859968	chr6:163859014-163859015	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs192152988	chr6:163859021-163859022	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs529973014	chr6:163859030-163859031	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs57024640	chr6:163859075-163859076	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs546571664	chr6:163859076-163859077	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs566384583	chr6:163859090-163859091	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs538686097	chr6:163859147-163859148	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs567681957	chr6:163859148-163859149	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs372497319	chr6:163859150-163859151	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs537259444	chr6:163859158-163859159	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs557164787	chr6:163859182-163859183	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs573971395	chr6:163859274-163859275	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs9456863	chr6:163859346-163859347	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs147361916	chr6:163859366-163859367	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs35161044	chr6:163859388-163859389	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs397885291	chr6:163859390-163859391	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs183186270	chr6:163859422-163859423	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs545459177	chr6:163859432-163859433	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs565395673	chr6:163859468-163859469	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs188211863	chr6:163859479-163859480	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs531061009	chr6:163859508-163859509	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs567805111	chr6:163859514-163859515	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs544400302	chr6:163859532-163859533	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs80323441	chr6:163859550-163859551	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs529990897	chr6:163859557-163859558	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs535277054	chr6:163859618-163859619	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Ovarian cancer	21720365	CNVD
Glioblastoma multiforme	21138945	CNVD
Ovarian cancer	22355333	CNVD
abnormal development	18461090	CNVD
Breast cancer	22522925	CNVD
Epilepsy	22083797	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:2144 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163838000-163860600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:163840800-163865000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:163840800-163881400	Weak transcription	Fetal Stomach	stomach
4	chr6:163841600-163858600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:163841600-163864400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:163842600-163865200	Weak transcription	Fetal Kidney	kidney
7	chr6:163843800-163862600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:163844200-163860400	Weak transcription	Lung	lung
9	chr6:163845400-163877800	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:163846000-163861600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:163846400-163860000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:163847800-163862400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:163847800-163862600	Weak transcription	Aorta	Aorta
14	chr6:163848800-163878400	Weak transcription	Pancreas	Pancrea
15	chr6:163849200-163859000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:163851000-163858600	Weak transcription	HSMM	muscle
17	chr6:163852000-163858800	Weak transcription	HSMMtube	muscle
18	chr6:163852000-163859400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:163852000-163859400	Weak transcription	NHEK	skin
20	chr6:163852000-163880000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:163852200-163858600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:163852200-163858600	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr6:163852200-163865200	Weak transcription	A549	lung
24	chr6:163852200-163875600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:163852200-163875600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:163853400-163858800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:163853600-163862600	Weak transcription	Esophagus	oesophagus
28	chr6:163853800-163859000	Weak transcription	Colon Smooth Muscle	Colon
29	chr6:163854400-163858600	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr6:163855200-163860000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr6:163855400-163858400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:163855400-163859600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:163855400-163860000	Weak transcription	Left Ventricle	heart
34	chr6:163855400-163860600	Weak transcription	Psoas Muscle	Psoas
35	chr6:163856200-163858400	Enhancers	Primary B cells from cord blood	blood
36	chr6:163856400-163858600	Weak transcription	Stomach Mucosa	stomach
37	chr6:163856400-163861400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:163856400-163865600	Enhancers	Adipose Nuclei	Adipose
39	chr6:163856600-163858600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr6:163856600-163858600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr6:163856600-163858800	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:163856600-163859000	Enhancers	Brain Cingulate Gyrus	brain
43	chr6:163856600-163859400	Weak transcription	Fetal Brain Female	brain
44	chr6:163856800-163859000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:163857000-163858400	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr6:163857000-163858600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:163857000-163859600	Enhancers	HUVEC	blood vessel
48	chr6:163857200-163858600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:163857200-163858800	Weak transcription	Brain Germinal Matrix	brain
50	chr6:163857400-163858600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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