Variant report

Variant	rs545459177
Chromosome Location	chr6:163859432-163859433
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:163840085..163841837-chr6:163858856..163861674,2	MCF-7	breast:
2	chr6:163844662..163847045-chr6:163859401..163861276,2	MCF-7	breast:
3	chr6:163833543..163837266-chr6:163857952..163863749,8	K562	blood:

Variant related genes	Relation type
ENSG00000112531	Chromatin interaction
ENSG00000270419	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1797109	chr6:163834147-163908115	Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1019551	chr6:163842358-163965216	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1017495	chr6:163856399-163981095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv523664	chr6:163858237-163907885	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163838000-163860600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:163840800-163865000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:163840800-163881400	Weak transcription	Fetal Stomach	stomach
4	chr6:163841600-163864400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:163842600-163865200	Weak transcription	Fetal Kidney	kidney
6	chr6:163843800-163862600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:163844200-163860400	Weak transcription	Lung	lung
8	chr6:163845400-163877800	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:163846000-163861600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:163846400-163860000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:163847800-163862400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:163847800-163862600	Weak transcription	Aorta	Aorta
13	chr6:163848800-163878400	Weak transcription	Pancreas	Pancrea
14	chr6:163852000-163880000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:163852200-163865200	Weak transcription	A549	lung
16	chr6:163852200-163875600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:163852200-163875600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:163853600-163862600	Weak transcription	Esophagus	oesophagus
19	chr6:163855200-163860000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr6:163855400-163859600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:163855400-163860000	Weak transcription	Left Ventricle	heart
22	chr6:163855400-163860600	Weak transcription	Psoas Muscle	Psoas
23	chr6:163856400-163861400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:163856400-163865600	Enhancers	Adipose Nuclei	Adipose
25	chr6:163857000-163859600	Enhancers	HUVEC	blood vessel
26	chr6:163857400-163860400	Enhancers	NH-A	brain
27	chr6:163857400-163860600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr6:163857800-163859800	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr6:163857800-163859800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr6:163857800-163860200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr6:163857800-163860200	Enhancers	Osteobl	bone
32	chr6:163857800-163860400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr6:163857800-163860600	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr6:163857800-163862800	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr6:163858000-163859800	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr6:163858000-163860200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:163858000-163860200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:163858000-163860200	Enhancers	HepG2	liver
39	chr6:163858000-163860400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:163858000-163863800	Enhancers	Liver	Liver
41	chr6:163858200-163860400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:163858400-163862200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr6:163858400-163864000	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr6:163858400-163876600	Weak transcription	Primary B cells from cord blood	blood
45	chr6:163858600-163859600	Enhancers	Primary T cells from cord blood	blood
46	chr6:163858600-163859600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:163858600-163859600	Flanking Active TSS	Brain Substantia Nigra	brain
48	chr6:163858600-163859800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr6:163858600-163860200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:163858600-163860200	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links