Variant report

Variant	nsv524282
Chromosome Location	chr9:100677166-100684757
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:100684224-100686419	K562	blood:	n/a	n/a
2	ARID3A	chr9:100684260-100686407	HepG2	liver:	n/a	n/a
3	ATF1	chr9:100684282-100685188	K562	blood:	n/a	n/a
4	ATF2	chr9:100684073-100685301	GM12878	blood:	n/a	n/a
5	ATF2	chr9:100683989-100685050	GM12878	blood:	n/a	n/a
6	ATF2	chr9:100684077-100684951	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr9:100684058-100684887	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF3	chr9:100684382-100684867	H1-hESC	embryonic stem cell:	n/a	chr9:100684512-100684523 chr9:100684509-100684524 chr9:100684513-100684521 chr9:100684512-100684520 chr9:100684510-100684520 chr9:100684512-100684526 chr9:100684509-100684522 chr9:100684510-100684523 chr9:100684513-100684523 chr9:100684513-100684520 chr9:100684511-100684524 chr9:100684513-100684524
9	ATF3	chr9:100684269-100684998	GM12878	blood:	n/a	chr9:100684512-100684523 chr9:100684509-100684524 chr9:100684513-100684521 chr9:100684512-100684520 chr9:100684510-100684520 chr9:100684512-100684526 chr9:100684509-100684522 chr9:100684510-100684523 chr9:100684513-100684523 chr9:100684513-100684520 chr9:100684511-100684524 chr9:100684513-100684524
10	ATF3	chr9:100684173-100685023	A549	lung:	n/a	chr9:100684512-100684523 chr9:100684509-100684524 chr9:100684513-100684521 chr9:100684512-100684520 chr9:100684510-100684520 chr9:100684512-100684526 chr9:100684509-100684522 chr9:100684510-100684523 chr9:100684513-100684523 chr9:100684513-100684520 chr9:100684511-100684524 chr9:100684513-100684524
11	ATF3	chr9:100684331-100684942	HepG2	liver:	n/a	chr9:100684512-100684523 chr9:100684509-100684524 chr9:100684513-100684521 chr9:100684512-100684520 chr9:100684510-100684520 chr9:100684512-100684526 chr9:100684509-100684522 chr9:100684510-100684523 chr9:100684513-100684523 chr9:100684513-100684520 chr9:100684511-100684524 chr9:100684513-100684524
12	ATF3	chr9:100684387-100684853	GM12878	blood:	n/a	chr9:100684512-100684523 chr9:100684509-100684524 chr9:100684513-100684521 chr9:100684512-100684520 chr9:100684510-100684520 chr9:100684512-100684526 chr9:100684509-100684522 chr9:100684510-100684523 chr9:100684513-100684523 chr9:100684513-100684520 chr9:100684511-100684524 chr9:100684513-100684524
13	ATF3	chr9:100684113-100685004	A549	lung:	n/a	chr9:100684512-100684523 chr9:100684509-100684524 chr9:100684513-100684521 chr9:100684512-100684520 chr9:100684510-100684520 chr9:100684512-100684526 chr9:100684509-100684522 chr9:100684510-100684523 chr9:100684513-100684523 chr9:100684513-100684520 chr9:100684511-100684524 chr9:100684513-100684524
14	ATF3	chr9:100684355-100684943	K562	blood:	n/a	chr9:100684512-100684523 chr9:100684509-100684524 chr9:100684513-100684521 chr9:100684512-100684520 chr9:100684510-100684520 chr9:100684512-100684526 chr9:100684509-100684522 chr9:100684510-100684523 chr9:100684513-100684523 chr9:100684513-100684520 chr9:100684511-100684524 chr9:100684513-100684524
15	ATF3	chr9:100684335-100684912	K562	blood:	n/a	chr9:100684512-100684523 chr9:100684509-100684524 chr9:100684513-100684521 chr9:100684512-100684520 chr9:100684510-100684520 chr9:100684512-100684526 chr9:100684509-100684522 chr9:100684510-100684523 chr9:100684513-100684523 chr9:100684513-100684520 chr9:100684511-100684524 chr9:100684513-100684524
16	ATF3	chr9:100684283-100684965	K562	blood:	n/a	chr9:100684512-100684523 chr9:100684509-100684524 chr9:100684513-100684521 chr9:100684512-100684520 chr9:100684510-100684520 chr9:100684512-100684526 chr9:100684509-100684522 chr9:100684510-100684523 chr9:100684513-100684523 chr9:100684513-100684520 chr9:100684511-100684524 chr9:100684513-100684524
17	ATF3	chr9:100684264-100684929	H1-hESC	embryonic stem cell:	n/a	chr9:100684512-100684523 chr9:100684509-100684524 chr9:100684513-100684521 chr9:100684512-100684520 chr9:100684510-100684520 chr9:100684512-100684526 chr9:100684509-100684522 chr9:100684510-100684523 chr9:100684513-100684523 chr9:100684513-100684520 chr9:100684511-100684524 chr9:100684513-100684524
18	ATF3	chr9:100684204-100684919	HepG2	liver:	n/a	chr9:100684512-100684523 chr9:100684509-100684524 chr9:100684513-100684521 chr9:100684512-100684520 chr9:100684510-100684520 chr9:100684512-100684526 chr9:100684509-100684522 chr9:100684510-100684523 chr9:100684513-100684523 chr9:100684513-100684520 chr9:100684511-100684524 chr9:100684513-100684524
19	BACH1	chr9:100684453-100684954	H1-hESC	embryonic stem cell:	n/a	n/a
20	BACH1	chr9:100682774-100682817	K562	blood:	n/a	n/a
21	BATF	chr9:100684313-100684720	GM12878	blood:	n/a	chr9:100684510-100684523
22	BCL3	chr9:100684217-100685198	A549	lung:	n/a	n/a
23	BCL3	chr9:100684092-100685019	A549	lung:	n/a	n/a
24	BCL3	chr9:100684271-100684677	GM12878	blood:	n/a	n/a
25	BCLAF1	chr9:100684095-100685164	GM12878	blood:	n/a	n/a
26	BCLAF1	chr9:100684146-100684894	GM12878	blood:	n/a	n/a
27	BHLHE40	chr9:100684232-100685098	HepG2	liver:	n/a	chr9:100684553-100684566 chr9:100684555-100684564 chr9:100684549-100684570 chr9:100684555-100684564 chr9:100684556-100684565
28	BHLHE40	chr9:100684247-100685102	K562	blood:	n/a	chr9:100684553-100684566 chr9:100684555-100684564 chr9:100684549-100684570 chr9:100684555-100684564 chr9:100684556-100684565
29	BHLHE40	chr9:100684317-100684818	A549	lung:	n/a	chr9:100684553-100684566 chr9:100684555-100684564 chr9:100684549-100684570 chr9:100684555-100684564 chr9:100684556-100684565
30	BHLHE40	chr9:100684180-100685080	GM12878	blood:	n/a	chr9:100684553-100684566 chr9:100684555-100684564 chr9:100684549-100684570 chr9:100684555-100684564 chr9:100684556-100684565
31	BRCA1	chr9:100684299-100684980	Hela-S3	cervix:	n/a	n/a
32	BRCA1	chr9:100684185-100685089	H1-hESC	embryonic stem cell:	n/a	n/a
33	BRCA1	chr9:100684333-100684994	GM12878	blood:	n/a	n/a
34	BRCA1	chr9:100684279-100684784	HepG2	liver:	n/a	n/a
35	CBX3	chr9:100684283-100685288	K562	blood:	n/a	n/a
36	CBX3	chr9:100684197-100685341	K562	blood:	n/a	n/a
37	CCNT2	chr9:100684409-100685098	K562	blood:	n/a	n/a
38	CEBPB	chr9:100684176-100684836	GM12878	blood:	n/a	n/a
39	CEBPB	chr9:100684343-100684753	HepG2	liver:	n/a	n/a
40	CEBPB	chr9:100684248-100685222	K562	blood:	n/a	chr9:100685192-100685205
41	CEBPB	chr9:100684335-100685229	K562	blood:	n/a	chr9:100685192-100685205
42	CEBPB	chr9:100684434-100684726	GM12878	blood:	n/a	n/a
43	CEBPB	chr9:100684407-100684731	H1-hESC	embryonic stem cell:	n/a	n/a
44	CEBPB	chr9:100684402-100684561	K562	blood:	n/a	n/a
45	CEBPB	chr9:100684324-100685152	Hela-S3	cervix:	n/a	n/a
46	CEBPD	chr9:100684249-100684596	HepG2	liver:	n/a	n/a
47	CEBPD	chr9:100684288-100685058	HepG2	liver:	n/a	n/a
48	CEBPD	chr9:100684206-100685037	K562	blood:	n/a	n/a
49	CHD1	chr9:100684156-100685235	GM12878	blood:	n/a	n/a
50	CHD1	chr9:100684372-100684720	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:100681080-100681130	HIPEpiC	eye:	n/a
2	chr9:100681080-100681130	CMK	blood:	n/a
3	chr9:100684122-100684172	AG10803	skin:	n/a
4	chr9:100681080-100681130	H1-hESC	embryonic stem cell:	embryo
5	chr9:100684122-100684172	HEK293	kidney:	embryo
6	chr9:100684122-100684172	PANC-1	pancreas:	n/a
7	chr9:100681080-100681130	HUVEC	blood vessel:	n/a
8	chr9:100684122-100684172	SK-N-MC	brain:	n/a
9	chr9:100681080-100681130	HNPCEpiC	eye:	n/a
10	chr9:100684122-100684172	HCM	heart:	n/a
11	chr9:100684122-100684172	A549	lung:	n/a
12	chr9:100684122-100684172	SKMC	muscle:	n/a
13	chr9:100681080-100681130	AG09319	gingival:	n/a
14	chr9:100681080-100681130	Hela-S3	cervix:	n/a
15	chr9:100681080-100681130	Jurkat	blood:	n/a
16	chr9:100681080-100681130	K562	blood:	n/a
17	chr9:100681080-100681130	HMEC	breast:	n/a
18	chr9:100684122-100684172	ECC-1	luminal epithelium:	n/a
19	chr9:100684122-100684172	Hela-S3	cervix:	n/a
20	chr9:100684122-100684172	HL-60	blood:	n/a
21	chr9:100681080-100681130	HCF	heart:	n/a
22	chr9:100681080-100681130	HL-60	blood:	n/a
23	chr9:100681080-100681130	NB4	blood:	n/a
24	chr9:100681080-100681130	NH-A	brain:	n/a
25	chr9:100684122-100684172	AG04449	skin:	fetal
26	chr9:100681080-100681130	HCT-116	colon:	n/a
27	chr9:100684122-100684172	HCF	heart:	n/a
28	chr9:100681080-100681130	PANC-1	pancreas:	n/a
29	chr9:100684122-100684172	AG04450	lung:	fetal
30	chr9:100681080-100681130	MCF10A-Er-Src	breast:	n/a
31	chr9:100684122-100684172	HCPEpiC	choroid plexus:	n/a
32	chr9:100684122-100684172	T-47D	breast:	n/a
33	chr9:100684122-100684172	HNPCEpiC	eye:	n/a
34	chr9:100681080-100681130	SAEC	small airway:	n/a
35	chr9:100681080-100681130	HCPEpiC	choroid plexus:	n/a
36	chr9:100684122-100684172	PrEC	prostate:	n/a
37	chr9:100681080-100681130	AoSMC	blood vessel:	n/a
38	chr9:100684122-100684172	HRCEpiC	kidney:	n/a
39	chr9:100684122-100684172	ProgFib	skin:	n/a
40	chr9:100681080-100681130	PFSK-1	brain:	n/a
41	chr9:100681080-100681130	AG04450	lung:	fetal
42	chr9:100681080-100681130	HRPEpiC	eye:	n/a
43	chr9:100681080-100681130	ovcar-3	ovarian:	n/a
44	chr9:100684122-100684172	GM12891	blood:	n/a
45	chr9:100684122-100684172	GM12892	blood:	n/a
46	chr9:100681080-100681130	HRCEpiC	kidney:	n/a
47	chr9:100684122-100684172	GM06990	blood:	n/a
48	chr9:100681080-100681130	MCF-7	breast:	n/a
49	chr9:100684122-100684172	HepG2	liver:	n/a
50	chr9:100681080-100681130	GM06990	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:100683227..100687367-chr9:100758311..100762778,5	K562	blood:
2	chr19:5690248..5690846-chr9:100684329..100685317,2	Hela-S3	cervix:
3	chr9:100394343..100396600-chr9:100677965..100680117,2	MCF-7	breast:
4	chr2:73612640..73613510-chr9:100684147..100685046,2	Hela-S3	cervix:
5	chr10:35484287..35485259-chr9:100684125..100684996,2	Hela-S3	cervix:
6	chr9:100683358..100685652-chr9:101557664..101560368,2	K562	blood:
7	chr9:100680787..100683644-chr9:100817248..100819899,3	K562	blood:
8	chr9:100442755..100444347-chr9:100682723..100684421,2	K562	blood:
9	chr9:100684661..100686943-chr9:100794140..100799259,5	K562	blood:
10	chr9:100684640..100686948-chr9:100880759..100882563,2	K562	blood:
11	chr9:100684436..100684977-chrX:40440205..40441030,2	Hela-S3	cervix:
12	chr3:39455893..39456821-chr9:100683995..100684518,2	HCT-116	colon:
13	chr1:145507315..145508085-chr9:100684014..100684726,2	Hela-S3	cervix:
14	chr9:100682507..100691249-chr9:100739828..100748095,35	MCF-7	breast:
15	chr17:52978107..52978650-chr9:100684226..100685178,2	Hela-S3	cervix:
16	chr20:48599018..48599575-chr9:100684497..100685019,2	Hela-S3	cervix:
17	chr6:133561719..133562540-chr9:100684595..100685146,2	Hela-S3	cervix:
18	chr9:100683079..100687048-chr9:101015405..101020638,4	K562	blood:
19	chr9:100674231..100678302-chr9:100744904..100747134,4	MCF-7	breast:
20	chr19:55895131..55895969-chr9:100684595..100685317,2	Hela-S3	cervix:
21	chr9:100679913..100686278-chr9:100816188..100820459,11	K562	blood:
22	chr9:100682848..100684487-chr9:100772925..100774602,2	K562	blood:
23	chr1:86397392..86400390-chr9:100675486..100677661,2	K562	blood:
24	chr9:100681549..100683928-chr9:100781112..100782667,2	K562	blood:
25	chr9:100683172..100685162-chr9:100749919..100752438,2	MCF-7	breast:
26	chr9:100393929..100396893-chr9:100683273..100687162,3	K562	blood:
27	chr9:100682586..100684494-chr9:100954318..100956463,2	MCF-7	breast:
28	chr2:201981489..201982019-chr9:100684640..100685215,2	Hela-S3	cervix:
29	chr6:31703444..31704424-chr9:100684339..100685051,2	Hela-S3	cervix:
30	chr16:10674320..10675054-chr9:100684357..100685157,2	Hela-S3	cervix:
31	chr17:7387588..7388177-chr9:100684359..100685331,2	Hela-S3	cervix:
32	chr9:100682029..100688801-chr9:100740969..100749393,29	MCF-7	breast:
33	chr9:100634662..100636711-chr9:100679210..100681058,2	K562	blood:
34	chr9:100466474..100468807-chr9:100682892..100684747,2	MCF-7	breast:
35	chr7:138145133..138145677-chr9:100684432..100685419,2	Hela-S3	cervix:
36	chr9:100683922..100686421-chr9:100749688..100751954,2	MCF-7	breast:
37	chr9:100678422..100708679-chr9:100734559..100755577,174	K562	blood:
38	chr9:100677016..100678517-chr9:100817759..100820189,2	MCF-7	breast:
39	chr1:145382412..145382912-chr9:100684586..100685344,2	Hela-S3	cervix:
40	chr9:100684278..100686693-chr9:100816052..100820620,8	K562	blood:
41	chr9:100679777..100682034-chr9:100778305..100780071,2	K562	blood:
42	chr9:100679350..100681181-chr9:100715024..100716909,2	K562	blood:
43	chr4:52710261..52711062-chr9:100684451..100685047,2	Hela-S3	cervix:
44	chr9:100679521..100682199-chr9:101551039..101553640,2	K562	blood:
45	chr2:204400007..204400680-chr9:100684347..100685133,2	Hela-S3	cervix:
46	chr9:100661983..100664921-chr9:100679667..100682904,3	MCF-7	breast:
47	chr9:100681171..100682684-chr9:100835448..100838283,2	K562	blood:
48	chr9:100683337..100688322-chr9:101015638..101019207,5	MCF-7	breast:
49	chr9:100683217..100685598-chr9:100817702..100819594,2	MCF-7	breast:
50	chr9:100675954..100709047-chr9:100737887..100755543,175	K562	blood:

Variant related genes	Relation type
C9orf156	TF binding region
ENSG00000201830	TF binding region
C9orf156	CpG island
ENSG00000201830	CpG island
ENSG00000131795	chromatin interactions
ENSG00000182220	chromatin interactions
ENSG00000095383	chromatin interactions
ENSG00000136560	chromatin interactions
ENSG00000095794	chromatin interactions
ENSG00000095380	chromatin interactions
ENSG00000236896	chromatin interactions
ENSG00000136936	chromatin interactions
ENSG00000213853	chromatin interactions
ENSG00000136925	chromatin interactions
ENSG00000122779	chromatin interactions
ENSG00000201558	chromatin interactions
ENSG00000213719	chromatin interactions
ENSG00000141198	chromatin interactions
ENSG00000243710	chromatin interactions
ENSG00000234222	chromatin interactions
ENSG00000124216	chromatin interactions
ENSG00000233396	chromatin interactions
ENSG00000106785	chromatin interactions
ENSG00000181222	chromatin interactions
ENSG00000165138	chromatin interactions
ENSG00000136937	chromatin interactions
ENSG00000155876	chromatin interactions
ENSG00000233493	chromatin interactions
ENSG00000212521	chromatin interactions
ENSG00000130255	chromatin interactions
ENSG00000109184	chromatin interactions
ENSG00000173166	chromatin interactions
ENSG00000116127	chromatin interactions
ENSG00000112319	chromatin interactions
ENSG00000115875	chromatin interactions
ENSG00000003402	chromatin interactions
ENSG00000106789	chromatin interactions
ENSG00000117395	chromatin interactions
ENSG00000136938	chromatin interactions

Extended variants
information (count: 260 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:260 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs3780420	chr9:100677166-100677167	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs565594030	chr9:100677218-100677219	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs148535326	chr9:100677230-100677231	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs548042150	chr9:100677254-100677255	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs566252452	chr9:100677306-100677307	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs142894664	chr9:100677307-100677308	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs548691177	chr9:100677309-100677310	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs76058284	chr9:100677380-100677381	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
9	rs376088543	chr9:100677410-100677411	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
10	rs537459363	chr9:100677431-100677432	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
11	rs150638302	chr9:100677494-100677495	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs534598518	chr9:100677503-100677504	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs565148767	chr9:100677521-100677522	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs532621781	chr9:100677588-100677589	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs10984349	chr9:100677756-100677757	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs140747635	chr9:100677782-100677783	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs112655428	chr9:100677822-100677823	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs7028759	chr9:100677883-100677884	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs78085824	chr9:100677928-100677929	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs189448594	chr9:100677933-100677934	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs545798275	chr9:100677984-100677985	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
22	rs563907426	chr9:100678115-100678116	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
23	rs35663266	chr9:100678136-100678137	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
24	rs577491016	chr9:100678167-100678168	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
25	rs544662224	chr9:100678201-100678202	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
26	rs560026559	chr9:100678209-100678210	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
27	rs4743143	chr9:100678230-100678231	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs548755599	chr9:100678268-100678269	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
29	rs147646308	chr9:100678269-100678270	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
30	rs530874491	chr9:100678313-100678314	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
31	rs371638195	chr9:100678401-100678402	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
32	rs181371281	chr9:100678420-100678421	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
33	rs186572958	chr9:100678432-100678433	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
34	rs189222104	chr9:100678433-100678434	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
35	rs142235262	chr9:100678461-100678462	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
36	rs567966092	chr9:100678468-100678469	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
37	rs368359909	chr9:100678525-100678526	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs149721127	chr9:100678527-100678528	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs556841343	chr9:100678528-100678529	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs61741115	chr9:100678543-100678544	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs370903708	chr9:100678552-100678553	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs61756688	chr9:100678553-100678554	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs375540000	chr9:100678555-100678556	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs201263313	chr9:100678577-100678578	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs143707778	chr9:100678598-100678599	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs539138582	chr9:100678614-100678615	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs181919799	chr9:100678624-100678625	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs78832559	chr9:100678625-100678626	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
49	rs540193077	chr9:100678671-100678672	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
50	rs148874682	chr9:100678730-100678731	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Biliary cancer	19435499	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Basal cell nevus syndrome	21572526	CNVD
Mental retardation	19951919	CNVD
Retinoblastoma	22278416	CNVD
9q22.3 microdeletion syndrome	22283845	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
overgrowth syndrome	16570072	CNVD
Neurodevelopmental disorder	22521361	CNVD
Nicotine dependence	17160897	CNVD
Mantle cell lymphoma	19029149	CNVD

Chromatin state (count:600 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100658800-100681800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:100662800-100684200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:100665400-100679000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:100665600-100678200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:100667200-100679400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:100667200-100684200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:100669600-100678600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
8	chr9:100669600-100678800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
9	chr9:100669800-100678400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:100670000-100678600	Strong transcription	Duodenum Mucosa	Duodenum
11	chr9:100670000-100684200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:100670200-100678600	Strong transcription	Liver	Liver
13	chr9:100670200-100678600	Strong transcription	Placenta	Placenta
14	chr9:100670200-100678600	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr9:100670400-100678400	Strong transcription	Dnd41	blood
16	chr9:100670400-100679400	Strong transcription	Thymus	Thymus
17	chr9:100670800-100684200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr9:100671000-100677400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:100671000-100677800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:100671000-100678400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:100671200-100680200	Strong transcription	Primary B cells from peripheral blood	blood
22	chr9:100671400-100678800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:100671600-100678200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:100671600-100678600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr9:100671600-100678600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr9:100671600-100678600	Strong transcription	Fetal Thymus	thymus
27	chr9:100671600-100678800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:100671800-100678400	Strong transcription	Primary B cells from cord blood	blood
29	chr9:100671800-100678600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:100671800-100680200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr9:100672000-100679800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr9:100672000-100679800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr9:100672200-100678200	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr9:100672200-100678600	Strong transcription	HSMM	muscle
35	chr9:100672800-100677800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr9:100672800-100684200	Weak transcription	Esophagus	oesophagus
37	chr9:100673000-100684000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr9:100673200-100682200	Weak transcription	Stomach Mucosa	stomach
39	chr9:100673400-100681000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr9:100673600-100684000	Weak transcription	NHDF-Ad	bronchial
41	chr9:100673800-100678600	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr9:100673800-100680000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr9:100673800-100683400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr9:100673800-100683400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr9:100673800-100684000	Weak transcription	Aorta	Aorta
46	chr9:100673800-100684200	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr9:100673800-100684400	Weak transcription	Spleen	Spleen
48	chr9:100674200-100678800	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr9:100674400-100678000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr9:100674600-100682800	Weak transcription	Brain Cingulate Gyrus	brain

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