Variant report

Variant	rs142235262
Chromosome Location	chr9:100678461-100678462
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100678422..100708679-chr9:100734559..100755577,174	K562	blood:
2	chr9:100394343..100396600-chr9:100677965..100680117,2	MCF-7	breast:
3	chr9:100677016..100678517-chr9:100817759..100820189,2	MCF-7	breast:
4	chr9:100675954..100709047-chr9:100737887..100755543,175	K562	blood:

Variant related genes	Relation type
ENSG00000136938	Chromatin interaction
ENSG00000236896	Chromatin interaction
ENSG00000095380	Chromatin interaction
ENSG00000136937	Chromatin interaction
ENSG00000136925	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1048135	chr9:100666931-100717030	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv525113	chr9:100669799-100686815	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	esv3483721	chr9:100675531-100678988	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	esv3483722	chr9:100675531-100678988	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv524282	chr9:100677166-100684757	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100658800-100681800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:100662800-100684200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:100665400-100679000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:100667200-100679400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:100667200-100684200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:100669600-100678600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
7	chr9:100669600-100678800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
8	chr9:100670000-100678600	Strong transcription	Duodenum Mucosa	Duodenum
9	chr9:100670000-100684200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:100670200-100678600	Strong transcription	Liver	Liver
11	chr9:100670200-100678600	Strong transcription	Placenta	Placenta
12	chr9:100670200-100678600	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr9:100670400-100679400	Strong transcription	Thymus	Thymus
14	chr9:100670800-100684200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr9:100671200-100680200	Strong transcription	Primary B cells from peripheral blood	blood
16	chr9:100671400-100678800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:100671600-100678600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr9:100671600-100678600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr9:100671600-100678600	Strong transcription	Fetal Thymus	thymus
20	chr9:100671600-100678800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:100671800-100678600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr9:100671800-100680200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr9:100672000-100679800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr9:100672000-100679800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr9:100672200-100678600	Strong transcription	HSMM	muscle
26	chr9:100672800-100684200	Weak transcription	Esophagus	oesophagus
27	chr9:100673000-100684000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr9:100673200-100682200	Weak transcription	Stomach Mucosa	stomach
29	chr9:100673400-100681000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:100673600-100684000	Weak transcription	NHDF-Ad	bronchial
31	chr9:100673800-100678600	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr9:100673800-100680000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr9:100673800-100683400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:100673800-100683400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr9:100673800-100684000	Weak transcription	Aorta	Aorta
36	chr9:100673800-100684200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr9:100673800-100684400	Weak transcription	Spleen	Spleen
38	chr9:100674200-100678800	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr9:100674600-100682800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr9:100674600-100684000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr9:100674800-100678600	Strong transcription	Primary T cells from cord blood	blood
42	chr9:100674800-100680800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr9:100675200-100683800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr9:100675200-100684000	Weak transcription	Colonic Mucosa	Colon
45	chr9:100675200-100684000	Weak transcription	A549	lung
46	chr9:100675200-100684000	Weak transcription	NH-A	brain
47	chr9:100675200-100684200	Weak transcription	Ovary	ovary
48	chr9:100675400-100681000	Weak transcription	Colon Smooth Muscle	Colon
49	chr9:100675400-100682000	Weak transcription	Brain Substantia Nigra	brain
50	chr9:100675400-100684000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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