Variant report

Variant	nsv524553
Chromosome Location	chr17:15647723-15679601
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:94)
CpG islands
(count:488)
Chromatin interactive
region (count:2)
LncRNA
region (count:15)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:94 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr17:15672262-15672511	MCF-7	breast:	n/a	n/a
2	CTCF	chr17:15672060-15672210	HAc	cerebellar:	n/a	n/a
3	CTCF	chr17:15677202-15677291	GM20000	blood:	n/a	n/a
4	CTCF	chr17:15652603-15652660	A549	lung:	n/a	chr17:15652623-15652636
5	CTCF	chr17:15672315-15672472	ProgFib	skin:	n/a	n/a
6	CTCF	chr17:15672291-15672439	LNCaP	prostate:	n/a	n/a
7	CTCF	chr17:15672250-15672516	GM12878	blood:	n/a	n/a
8	CTCF	chr17:15672282-15672499	GM12892	blood:	n/a	n/a
9	CTCF	chr17:15672311-15672497	Fibrobl	skin:	n/a	n/a
10	CTCF	chr17:15672261-15672504	MCF-7	breast:	n/a	n/a
11	CTCF	chr17:15672328-15672471	HepG2	liver:	n/a	n/a
12	CTCF	chr17:15653788-15653894	LNCaP	prostate:	n/a	n/a
13	CTCF	chr17:15672304-15672497	Pancreas_OC	pancreas:	n/a	n/a
14	CTCF	chr17:15671235-15671316	GM13977	blood:	n/a	n/a
15	CTCF	chr17:15672364-15672436	Spleen_OC	spleen:	n/a	n/a
16	CTCF	chr17:15672282-15672486	GM12891	blood:	n/a	n/a
17	CTCF	chr17:15672365-15672431	GM19239	blood:	n/a	n/a
18	CTCF	chr17:15672266-15672501	MCF-7	breast:	n/a	n/a
19	CTCF	chr17:15672278-15672492	MCF-7	breast:	n/a	n/a
20	CTCF	chr17:15653545-15653592	GM13976	blood:	n/a	n/a
21	CTCF	chr17:15666698-15666753	Spleen_OC	spleen:	n/a	n/a
22	CTCF	chr17:15672330-15672420	GM19238	blood:	n/a	n/a
23	CTCF	chr17:15672313-15672454	GM19240	blood:	n/a	n/a
24	CTCF	chr17:15672264-15672508	MCF-7	breast:	n/a	n/a
25	CTCF	chr17:15672270-15672499	H1-hESC	embryonic stem cell:	n/a	n/a
26	CTCF	chr17:15672440-15672590	HFF-Myc	foreskin:	n/a	n/a
27	CTCF	chr17:15672282-15672486	NHEK	skin:	n/a	n/a
28	CTCF	chr17:15668468-15668555	Lung_OC	lung:	n/a	n/a
29	CTCF	chr17:15672340-15672469	HUVEC	blood vessel:	n/a	n/a
30	CTCF	chr17:15672228-15672496	A549	lung:	n/a	n/a
31	CTCF	chr17:15672366-15672430	K562	blood:	n/a	n/a
32	CTCF	chr17:15655194-15655285	GM13976	blood:	n/a	n/a
33	CTCF	chr17:15672364-15672419	Medullo	brain:	n/a	n/a
34	CTCF	chr17:15677252-15677352	Kidney_OC	kidney:	n/a	n/a
35	CTCF	chr17:15672277-15672498	Gliobla	brain:	n/a	n/a
36	CTCF	chr17:15672295-15672488	Hela-S3	cervix:	n/a	n/a
37	CTCF	chr17:15655205-15655263	GM13977	blood:	n/a	n/a
38	CTCF	chr17:15672290-15672483	A549	lung:	n/a	n/a
39	CTCF	chr17:15654856-15654909	GM13976	blood:	n/a	n/a
40	CTCF	chr17:15672440-15672590	SK-N-SH_RA	brain:	n/a	n/a
41	EBF1	chr17:15651996-15652216	GM12878	blood:	n/a	n/a
42	EBF1	chr17:15651959-15652279	GM12878	blood:	n/a	n/a
43	EP300	chr17:15647365-15648950	ECC-1	luminal epithelium:	n/a	n/a
44	EP300	chr17:15648028-15648795	ECC-1	luminal epithelium:	n/a	n/a
45	ESR1	chr17:15647592-15647971	ECC-1	luminal epithelium:	n/a	n/a
46	ESR1	chr17:15647573-15647954	ECC-1	luminal epithelium:	n/a	n/a
47	ESR1	chr17:15648086-15648695	ECC-1	luminal epithelium:	n/a	n/a
48	ESR1	chr17:15658091-15658495	T-47D	breast:	n/a	chr17:15658257-15658274 chr17:15658256-15658273
49	ESR1	chr17:15658120-15658430	T-47D	breast:	n/a	chr17:15658257-15658274 chr17:15658256-15658273
50	ESR1	chr17:15648102-15648599	ECC-1	luminal epithelium:	n/a	n/a

(count:488 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:15653473-15653523	HRE	kidney:	n/a
2	chr17:15653473-15653523	T-47D	breast:	n/a
3	chr17:15652715-15652765	AG09309	skin:	n/a
4	chr17:15653548-15653598	HNPCEpiC	eye:	n/a
5	chr17:15653548-15653598	NH-A	brain:	n/a
6	chr17:15652715-15652765	BJ	skin:	n/a
7	chr17:15652715-15652765	PFSK-1	brain:	n/a
8	chr17:15655637-15655687	BE2_C	brain:	n/a
9	chr17:15652715-15652765	GM06990	blood:	n/a
10	chr17:15653548-15653598	Hepatocyte	liver:	n/a
11	chr17:15655637-15655687	HL-60	blood:	n/a
12	chr17:15653096-15653146	HEEpiC	esophagus:	n/a
13	chr17:15655637-15655687	HRE	kidney:	n/a
14	chr17:15652715-15652765	PrEC	prostate:	n/a
15	chr17:15653473-15653523	GM06990	blood:	n/a
16	chr17:15652854-15652904	GM12892	blood:	n/a
17	chr17:15652329-15652379	H1-hESC	embryonic stem cell:	embryo
18	chr17:15653096-15653146	HUVEC	blood vessel:	n/a
19	chr17:15655637-15655687	HEK293	kidney:	embryo
20	chr17:15650385-15650435	PFSK-1	brain:	n/a
21	chr17:15653096-15653146	AG09309	skin:	n/a
22	chr17:15652854-15652904	Jurkat	blood:	n/a
23	chr17:15652854-15652904	PrEC	prostate:	n/a
24	chr17:15655637-15655687	NT2-D1	testis:	n/a
25	chr17:15652329-15652379	PFSK-1	brain:	n/a
26	chr17:15655637-15655687	HIPEpiC	eye:	n/a
27	chr17:15653096-15653146	NH-A	brain:	n/a
28	chr17:15652854-15652904	SK-N-MC	brain:	n/a
29	chr17:15652854-15652904	NHBE	bronchial:	n/a
30	chr17:15653473-15653523	AG04449	skin:	fetal
31	chr17:15653096-15653146	Caco-2	colon:	n/a
32	chr17:15652329-15652379	T-47D	breast:	n/a
33	chr17:15650385-15650435	NHBE	bronchial:	n/a
34	chr17:15653473-15653523	NH-A	brain:	n/a
35	chr17:15653548-15653598	ProgFib	skin:	n/a
36	chr17:15655637-15655687	Jurkat	blood:	n/a
37	chr17:15653096-15653146	HRCEpiC	kidney:	n/a
38	chr17:15652329-15652379	PrEC	prostate:	n/a
39	chr17:15653548-15653598	T-47D	breast:	n/a
40	chr17:15652715-15652765	HRPEpiC	eye:	n/a
41	chr17:15652715-15652765	SK-N-SH	brain:	n/a
42	chr17:15650385-15650435	HPAEpiC	pulmonary alveolar:	n/a
43	chr17:15653473-15653523	SKMC	muscle:	n/a
44	chr17:15652329-15652379	BE2_C	brain:	n/a
45	chr17:15652854-15652904	HCM	heart:	n/a
46	chr17:15652715-15652765	PANC-1	pancreas:	n/a
47	chr17:15653548-15653598	NHBE	bronchial:	n/a
48	chr17:15650385-15650435	AG10803	skin:	n/a
49	chr17:15652329-15652379	SK-N-MC	brain:	n/a
50	chr17:15652715-15652765	A549	lung:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15646677..15648283-chr17:15650856..15653224,2	K562	blood:
2	chr17:15646677..15648283-chr17:15650856..15653224,2	K562	blood:

(count:15 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM16-1	chr17:15649993-15650081	NONHSAT145863
2	lnc-TRIM16-1	chr17:15666900-15669134	NONHSAT145863
3	lnc-TRIM16-6	chr17:15661567-15661699	ucscGeneNc_uc010cow_1
4	lnc-TRIM16-6	chr17:15650705-15650937	NONHSAT145865
5	lnc-TRIM16-7	chr17:15663778-15664123	NONHSAT145868
6	lnc-TRIM16-6	chr17:15661567-15661668	NONHSAT145865
7	lnc-TRIM16-3	chr17:15666900-15667083	ENSG00000233193
8	lnc-TRIM16-7	chr17:15664746-15664857	NONHSAT145868
9	lnc-TRIM16-2	chr17:15652075-15652506	ENSG00000233002.2
10	lnc-TRIM16-6	chr17:15660004-15660081	ucscGeneNc_uc010cow_1
11	lnc-TRIM16-3	chr17:15664928-15665158	ENSG00000233193
12	lnc-TRIM16-6	chr17:15660004-15660081	NONHSAT145865
13	lnc-TRIM16-1	chr17:15643410-15648034	NONHSAT145863
14	lnc-TRIM16-1	chr17:15652017-15652629	NONHSAT145866
15	lnc-TRIM16-6	chr17:15650514-15650937	ucscGeneNc_uc010cow_1

No data

Variant related genes	Relation type
ENSG00000233002	TF binding region
ZSWIM5P1	TF binding region
CDRT15P2	TF binding region
ENSG00000233193	TF binding region
ENSG00000267227	TF binding region
ENSG00000233002	CpG island
ZSWIM5P1	CpG island
CDRT15P2	CpG island
ENSG00000233193	CpG island
ENSG00000267227	CpG island
ENSG00000233002	chromatin interactions
ENSG00000267227	chromatin interactions

Extended variants
information (count: 506 )
Associated
traits (count: 128 )

Variant overlapped rSNPs/rCNVs (count:506 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2240593	chr17:15647723-15647724	Enhancers Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs554996088	chr17:15647736-15647737	Enhancers Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
3	rs183057951	chr17:15647751-15647752	Enhancers Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
4	rs543496478	chr17:15647775-15647776	Enhancers Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
5	rs557327185	chr17:15647829-15647830	Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
6	rs577267622	chr17:15647882-15647883	Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
7	rs1057430	chr17:15647895-15647896	Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs185965003	chr17:15647912-15647913	Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
9	rs527511907	chr17:15647987-15647988	Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
10	rs200656446	chr17:15647999-15648000	Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
11	rs555792699	chr17:15648007-15648008	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
12	rs541205084	chr17:15648050-15648051	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs572028886	chr17:15648061-15648062	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs189720562	chr17:15648092-15648093	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs140534065	chr17:15648102-15648103	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs541067755	chr17:15648310-15648311	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs368174477	chr17:15648311-15648312	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs564369707	chr17:15648318-15648319	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs533293515	chr17:15648329-15648330	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs373005186	chr17:15648366-15648367	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs531948989	chr17:15648443-15648444	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs551878165	chr17:15648467-15648468	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs565419854	chr17:15648472-15648473	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs534943094	chr17:15648476-15648477	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs34379438	chr17:15648493-15648494	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs548758105	chr17:15648497-15648498	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs568513939	chr17:15648498-15648499	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs544223096	chr17:15648534-15648535	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs376563151	chr17:15648540-15648541	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs543237517	chr17:15648624-15648625	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs537758032	chr17:15648627-15648628	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs183092327	chr17:15648638-15648639	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs577330924	chr17:15648665-15648666	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs539822375	chr17:15648677-15648678	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs187726430	chr17:15648687-15648688	Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs144404392	chr17:15648806-15648807	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs144755562	chr17:15648821-15648822	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs370620095	chr17:15648851-15648852	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs192691005	chr17:15648902-15648903	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs62072383	chr17:15648914-15648915	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs183601053	chr17:15649051-15649052	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs139290307	chr17:15649104-15649105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs188440054	chr17:15649131-15649132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs148523817	chr17:15649138-15649139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs551745369	chr17:15649173-15649174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs373827568	chr17:15649201-15649202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs559066151	chr17:15649239-15649240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs73272161	chr17:15649260-15649261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs565849211	chr17:15649277-15649278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs575515618	chr17:15649299-15649300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:128)

Disease	PMID	Source
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	17603634	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	19435819	CNVD
Non-small cell lung cancer	19010865	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Hepatocellular carcinoma	18803288	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Esophageal adenocarcinoma	18519675	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Chordoma	21602918	CNVD
Miller-Dieker syndrome	22283845	CNVD
Non-syndromic sensorineural hearing loss	17457615	CNVD
Cancer	22429812	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Ewing''s sarcoma	21437220	CNVD
Follicular lymphoma	19010834	CNVD
Colorectal cancer	20709793	CNVD
Acute myeloid leukemia	16864856	CNVD
Endometrial cancer	22040021	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Breast cancer	22028636	CNVD
Breast cancer	20837533	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
colon cancer	17210682	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Chronic lymphocytic leukemia	17971485	CNVD
Basal cell lymphoma	17170743	CNVD
Breast cancer	16461572	CNVD
Colorectal cancer	16272173	CNVD
Follicular lymphoma	17170743	CNVD
Human rectal carcinomas	16397240	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Moyamoya disease	22323933	CNVD
small cell lung cancer	20016488	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Myelodysplastic syndrome	21251322	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20724749	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Acute myeloid leukemia	17237825	CNVD
Colorectal cancer	21645411	CNVD
HIV/AIDS	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
HIV/AIDS	17953491	CNVD
HIV/AIDS	20877625	CNVD
Immune disease	21076436	CNVD
Rheumatoid arthritis	17953491	CNVD
Type 1 diabetes	17953491	CNVD
HIV/AIDS	15637236	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Ovarian cancer	21781307	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Neurofibromatosis	18196300	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Multiple myeloma	16616336	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21509527	CNVD
Pancreatic cancer	21811587	CNVD
Autism	17322880	CNVD
Hereditary neuropathy with liability to pressure palsy	19521722	CNVD
Schizophrenia	19571808	CNVD
Schizophrenia	19955444	CNVD
Charcot-marie-tooth disease	18787571	CNVD
Breast cancer	20409316	CNVD
Autism	18414403	CNVD
Breast cancer	17001317	CNVD
Rhabdomyosarcoma	16790082	CNVD
Myelofibrosis	22110671	CNVD
Peripheral neuropathy	21193943	CNVD
Schizophrenia	20587603	CNVD
Schizophrenia	22958593	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Ovarian cancer	20844748	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Charcot-marie-tooth disease	16463004	CNVD
Osteosarcoma	22292074	CNVD
Charcot	16760730	CNVD
Mental retardation	17901693	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	21858162	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17142309	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Autism	22102821	CNVD
Gastric cancer	18160780	CNVD
Non-syndromic sensorineural hearing loss	19212409	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15646400-15648400	Enhancers	Placenta	Placenta
2	chr17:15647400-15648800	Enhancers	Ovary	ovary
3	chr17:15647400-15649000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr17:15647400-15649000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr17:15647600-15647800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr17:15647600-15648000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr17:15647600-15648000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr17:15647600-15648400	Enhancers	Fetal Muscle Leg	muscle
9	chr17:15647600-15648400	Enhancers	Lung	lung
10	chr17:15647800-15649000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr17:15648000-15648400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr17:15648000-15648600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr17:15648000-15648800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr17:15648200-15648800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr17:15648200-15648800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr17:15648200-15649000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr17:15648800-15652800	Weak transcription	Ovary	ovary
18	chr17:15651400-15651800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr17:15651400-15651800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr17:15652600-15653000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
21	chr17:15652800-15653000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr17:15652800-15653000	Flanking Active TSS	Ovary	ovary
23	chr17:15652800-15653000	Flanking Active TSS	Psoas Muscle	Psoas
24	chr17:15652800-15653200	Enhancers	Placenta Amnion	Placenta Amnion
25	chr17:15652800-15653400	Active TSS	Right Ventricle	heart
26	chr17:15653000-15654000	Active TSS	Ovary	ovary
27	chr17:15671800-15672000	Enhancers	Fetal Muscle Leg	muscle
28	chr17:15672000-15672800	Weak transcription	Fetal Muscle Leg	muscle
29	chr17:15672000-15673200	Enhancers	Fetal Muscle Trunk	muscle
30	chr17:15672600-15674200	Enhancers	Stomach Smooth Muscle	stomach
31	chr17:15672800-15673000	Bivalent Enhancer	Fetal Stomach	stomach
32	chr17:15672800-15674000	Enhancers	Fetal Muscle Leg	muscle
33	chr17:15672800-15674400	Enhancers	Left Ventricle	heart
34	chr17:15672800-15674800	Enhancers	Fetal Heart	heart
35	chr17:15673200-15673600	Weak transcription	Fetal Muscle Trunk	muscle
36	chr17:15673600-15674000	Enhancers	Fetal Muscle Trunk	muscle
37	chr17:15674000-15674200	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links