Variant report

Variant	rs564369707
Chromosome Location	chr17:15648318-15648319
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr17:15647348-15648816	ECC-1	luminal epithelium:	n/a	n/a
2	ESR1	chr17:15648131-15648642	ECC-1	luminal epithelium:	n/a	n/a
3	ZBTB7A	chr17:15648021-15648780	ECC-1	luminal epithelium:	n/a	n/a
4	ESR1	chr17:15648102-15648599	ECC-1	luminal epithelium:	n/a	n/a
5	EP300	chr17:15648028-15648795	ECC-1	luminal epithelium:	n/a	n/a
6	MAX	chr17:15647233-15649043	ECC-1	luminal epithelium:	n/a	chr17:15648825-15648832 chr17:15648824-15648833 chr17:15648824-15648833 chr17:15648824-15648834
7	ZBTB7A	chr17:15648106-15648719	ECC-1	luminal epithelium:	n/a	n/a
8	EP300	chr17:15647365-15648950	ECC-1	luminal epithelium:	n/a	n/a
9	TCF12	chr17:15647945-15649014	ECC-1	luminal epithelium:	n/a	chr17:15648420-15648430 chr17:15648424-15648431
10	ESR1	chr17:15647567-15648739	ECC-1	luminal epithelium:	n/a	n/a
11	NFIC	chr17:15647517-15648768	ECC-1	luminal epithelium:	n/a	n/a
12	NFIC	chr17:15647454-15648844	ECC-1	luminal epithelium:	n/a	n/a
13	POLR2A	chr17:15648176-15648555	ECC-1	luminal epithelium:	n/a	n/a
14	MAX	chr17:15647263-15649074	ECC-1	luminal epithelium:	n/a	chr17:15648825-15648832 chr17:15648824-15648833 chr17:15648824-15648833 chr17:15648824-15648834
15	ESR1	chr17:15648110-15648614	ECC-1	luminal epithelium:	n/a	n/a
16	FOXM1	chr17:15647797-15648914	ECC-1	luminal epithelium:	n/a	n/a
17	ESR1	chr17:15648086-15648695	ECC-1	luminal epithelium:	n/a	n/a
18	TEAD4	chr17:15648072-15648778	ECC-1	luminal epithelium:	n/a	n/a
19	FOXM1	chr17:15648024-15648841	ECC-1	luminal epithelium:	n/a	n/a
20	TCF12	chr17:15647440-15648865	ECC-1	luminal epithelium:	n/a	chr17:15648420-15648430 chr17:15648424-15648431

Variant related genes	Relation type
ENSG00000233002	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
4	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1066023	chr17:15607267-16053512	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv907705	chr17:15611495-15717546	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	esv10233	chr17:15632283-15677380	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv2421582	chr17:15642546-15677001	Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv3693232	chr17:15644506-15657918	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
10	nsv978562	chr17:15647343-15657695	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv524553	chr17:15647723-15679601	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15646400-15648400	Enhancers	Placenta	Placenta
2	chr17:15647400-15648800	Enhancers	Ovary	ovary
3	chr17:15647400-15649000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr17:15647400-15649000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr17:15647600-15648400	Enhancers	Fetal Muscle Leg	muscle
6	chr17:15647600-15648400	Enhancers	Lung	lung
7	chr17:15647800-15649000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr17:15648000-15648400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr17:15648000-15648600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr17:15648000-15648800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr17:15648200-15648800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr17:15648200-15648800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr17:15648200-15649000	Enhancers	Cortex derived primary cultured neurospheres	brain

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