Variant report

Variant	nsv525064
Chromosome Location	chr9:110501437-110504358
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:110249403..110253964-chr9:110500193..110503915,6	MCF-7	breast:
2	chr9:110500118..110502060-chr9:111201913..111204415,2	MCF-7	breast:
3	chr9:110503474..110505849-chr9:110510284..110512558,2	MCF-7	breast:
4	chr9:110500719..110502247-chr9:110502621..110504318,2	MCF-7	breast:
5	chr9:110251154..110252819-chr9:110502244..110504957,2	MCF-7	breast:
6	chr9:110501617..110503212-chr9:110597427..110600005,2	MCF-7	breast:
7	chr9:110496966..110498533-chr9:110500002..110502085,2	MCF-7	breast:
8	chr9:110500719..110502247-chr9:110502621..110504318,2	MCF-7	breast:
9	chr9:110498957..110503711-chr9:110512687..110515100,7	MCF-7	breast:
10	chr9:110500818..110503086-chr9:110517383..110519685,3	MCF-7	breast:
11	chr9:110501530..110503176-chr9:110565296..110567173,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAD23B-15	chr9:110503471-110503542	NONHSAT133894

No data

Variant related genes	Relation type
ENSG00000136826	chromatin interactions

Extended variants
information (count: 123 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:123 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1851741	chr9:110501437-110501438	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs74400302	chr9:110501442-110501443	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs542382279	chr9:110501501-110501502	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs561016879	chr9:110501522-110501523	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs376136093	chr9:110501525-110501526	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs528110582	chr9:110501557-110501558	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs540214462	chr9:110501562-110501563	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs368518841	chr9:110501585-110501586	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs73653653	chr9:110501629-110501630	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs77692542	chr9:110501694-110501695	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs550820561	chr9:110501756-110501757	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs4979308	chr9:110501788-110501789	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs374113444	chr9:110501817-110501818	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs554573735	chr9:110501860-110501861	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs574536884	chr9:110501868-110501869	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs376407379	chr9:110501884-110501885	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs566938488	chr9:110501886-110501887	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs533976667	chr9:110501887-110501888	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs547181815	chr9:110501903-110501904	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs570822561	chr9:110501937-110501938	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs111353888	chr9:110501941-110501942	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs538951778	chr9:110501953-110501954	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs184055399	chr9:110501970-110501971	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs368143638	chr9:110501978-110501979	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs566890489	chr9:110502046-110502047	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs527758794	chr9:110502050-110502051	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs543243461	chr9:110502051-110502052	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs189886001	chr9:110502083-110502084	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs572892212	chr9:110502201-110502202	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs181751681	chr9:110502220-110502221	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs564548934	chr9:110502239-110502240	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs576393657	chr9:110502265-110502266	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs544524765	chr9:110502290-110502291	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs117406060	chr9:110502307-110502308	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs143195549	chr9:110502339-110502340	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs145957303	chr9:110502340-110502341	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs3983579	chr9:110502352-110502353	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs78185305	chr9:110502353-110502354	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs11788551	chr9:110502381-110502382	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs13292432	chr9:110502382-110502383	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs41527445	chr9:110502385-110502386	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
42	rs530264437	chr9:110502387-110502388	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs186920067	chr9:110502453-110502454	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs143329988	chr9:110502462-110502463	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs560425948	chr9:110502483-110502484	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs527798359	chr9:110502490-110502491	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs147080738	chr9:110502509-110502510	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs138496153	chr9:110502570-110502571	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs143506484	chr9:110502582-110502583	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs550929503	chr9:110502583-110502584	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Fukuyama congenital muscular dystrophy	21572526	CNVD
Testicular germ cell tumor	18059402	CNVD
Intracranial aneurysm	16715129	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD
Barrett''s adenocarcinoma	18663352	CNVD

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110495200-110501800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:110495800-110504200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:110496000-110503200	Enhancers	Fetal Lung	lung
4	chr9:110496000-110503600	Enhancers	Ovary	ovary
5	chr9:110496000-110510800	Weak transcription	Aorta	Aorta
6	chr9:110496200-110502000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:110496200-110502400	Weak transcription	Gastric	stomach
8	chr9:110496200-110502400	Enhancers	Osteobl	bone
9	chr9:110497000-110503000	Enhancers	NHDF-Ad	bronchial
10	chr9:110497000-110503000	Enhancers	NHLF	lung
11	chr9:110497200-110502000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:110497200-110502000	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:110497200-110506600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr9:110497200-110506800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr9:110497400-110503800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:110497400-110510800	Weak transcription	Psoas Muscle	Psoas
17	chr9:110498200-110503000	Enhancers	Fetal Stomach	stomach
18	chr9:110499400-110502800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr9:110499400-110504800	Enhancers	Fetal Muscle Trunk	muscle
20	chr9:110499600-110503000	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr9:110499600-110503400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr9:110499800-110502600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:110499800-110503400	Enhancers	HMEC	breast
24	chr9:110499800-110505200	Enhancers	Adipose Nuclei	Adipose
25	chr9:110500000-110502200	Enhancers	NH-A	brain
26	chr9:110500000-110504000	Enhancers	Stomach Mucosa	stomach
27	chr9:110500000-110504200	Enhancers	Fetal Muscle Leg	muscle
28	chr9:110500000-110505000	Weak transcription	Spleen	Spleen
29	chr9:110500200-110502400	Enhancers	HSMM	muscle
30	chr9:110500200-110502600	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr9:110500200-110503000	Enhancers	Right Ventricle	heart
32	chr9:110500200-110503000	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr9:110500400-110501800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr9:110500400-110503000	Enhancers	HSMMtube	muscle
35	chr9:110500600-110501600	Enhancers	Fetal Brain Male	brain
36	chr9:110500600-110504000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:110500800-110502200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr9:110500800-110502400	Enhancers	Lung	lung
39	chr9:110500800-110502400	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr9:110500800-110503000	Enhancers	Esophagus	oesophagus
41	chr9:110500800-110503000	Enhancers	Left Ventricle	heart
42	chr9:110500800-110503000	Enhancers	Right Atrium	heart
43	chr9:110500800-110511600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr9:110501000-110501600	Enhancers	Stomach Smooth Muscle	stomach
45	chr9:110501000-110502000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr9:110501000-110502000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:110501000-110502000	Weak transcription	Brain Hippocampus Middle	brain
48	chr9:110501000-110502000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr9:110501000-110503000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr9:110501000-110507000	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links