Variant report

Variant	nsv526761
Chromosome Location	chr10:97436393-97438823
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97437393..97439419-chr10:97441061..97443059,2	K562	blood:
2	chr10:97419292..97421837-chr10:97434385..97436890,2	K562	blood:
3	chr10:97414503..97416474-chr10:97435645..97437275,2	K562	blood:
4	chr10:97425900..97430899-chr10:97432163..97436745,6	MCF-7	breast:
5	chr10:97419292..97421697-chr10:97434103..97436890,2	K562	blood:
6	chr10:97432190..97434471-chr10:97435814..97437610,2	K562	blood:

Variant related genes	Relation type
ENSG00000059573	chromatin interactions

Extended variants
information (count: 73 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:73 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12098522	chr10:97436393-97436394	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs555304794	chr10:97436446-97436447	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs575286956	chr10:97436509-97436510	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs543712477	chr10:97436548-97436549	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs537591596	chr10:97436567-97436568	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs557740804	chr10:97436599-97436600	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs116488139	chr10:97436625-97436626	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs546488787	chr10:97436632-97436633	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs191740661	chr10:97436644-97436645	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs11188429	chr10:97436728-97436729	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs573487452	chr10:97436872-97436873	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs542394395	chr10:97436984-97436985	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs562185979	chr10:97437044-97437045	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs183878510	chr10:97437057-97437058	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs544307667	chr10:97437162-97437163	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs564104689	chr10:97437217-97437218	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs10654250	chr10:97437227-97437228	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs57706369	chr10:97437230-97437231	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs77077480	chr10:97437231-97437232	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs150657112	chr10:97437232-97437233	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs145336955	chr10:97437233-97437234	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs28459778	chr10:97437235-97437236	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs59451203	chr10:97437239-97437240	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs55811652	chr10:97437240-97437241	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs368599053	chr10:97437243-97437244	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs7072497	chr10:97437244-97437245	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs200504491	chr10:97437247-97437248	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs201781396	chr10:97437248-97437249	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs200531226	chr10:97437249-97437250	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs529211215	chr10:97437321-97437322	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs549155951	chr10:97437352-97437353	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs77237968	chr10:97437408-97437409	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs140959288	chr10:97437471-97437472	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs557902308	chr10:97437503-97437504	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs571235400	chr10:97437510-97437511	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs560284559	chr10:97437519-97437520	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs144773806	chr10:97437574-97437575	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs78656745	chr10:97437680-97437681	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs542161505	chr10:97437712-97437713	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs199886594	chr10:97437720-97437721	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs555886704	chr10:97437761-97437762	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs372048897	chr10:97437801-97437802	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs544268696	chr10:97437819-97437820	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs564219945	chr10:97437857-97437858	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs76824607	chr10:97437900-97437901	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs551870156	chr10:97437903-97437904	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs548975715	chr10:97437919-97437920	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs562813915	chr10:97437928-97437929	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs540222939	chr10:97438015-97438016	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs560329957	chr10:97438029-97438030	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Prostate cancer	16573809	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16912164	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:187 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97416600-97441000	Weak transcription	Spleen	Spleen
2	chr10:97416800-97441600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:97416800-97442400	Weak transcription	Small Intestine	intestine
4	chr10:97416800-97443400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:97417000-97436400	Weak transcription	HMEC	breast
6	chr10:97417000-97437400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:97417000-97439800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:97417000-97439800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:97417000-97439800	Weak transcription	Brain Substantia Nigra	brain
10	chr10:97417000-97441000	Weak transcription	HSMMtube	muscle
11	chr10:97417000-97442400	Weak transcription	Aorta	Aorta
12	chr10:97417000-97444200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:97417000-97445200	Weak transcription	Colonic Mucosa	Colon
14	chr10:97417000-97445800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:97417000-97445800	Weak transcription	NHLF	lung
16	chr10:97417200-97436400	Weak transcription	NHDF-Ad	bronchial
17	chr10:97417200-97437400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:97417200-97438800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:97417200-97438800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:97417200-97439000	Weak transcription	Fetal Brain Male	brain
21	chr10:97417200-97439600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:97417200-97439800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:97417200-97440000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:97417200-97441000	Weak transcription	Thymus	Thymus
25	chr10:97417200-97441800	Weak transcription	Brain Angular Gyrus	brain
26	chr10:97417200-97442400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:97417200-97444400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr10:97417200-97445800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:97417400-97439800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:97417600-97439000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:97421800-97441800	Weak transcription	Gastric	stomach
32	chr10:97423000-97452000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:97423600-97439000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:97423600-97441000	Weak transcription	Lung	lung
35	chr10:97423600-97441800	Weak transcription	Esophagus	oesophagus
36	chr10:97424000-97439600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr10:97424000-97440000	Weak transcription	Psoas Muscle	Psoas
38	chr10:97424000-97448200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:97424200-97437200	Weak transcription	Liver	Liver
40	chr10:97424200-97437400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr10:97424200-97438800	Weak transcription	Primary B cells from cord blood	blood
42	chr10:97424200-97439600	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:97424200-97440600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:97424400-97437400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr10:97424400-97437400	Weak transcription	NHEK	skin
46	chr10:97424400-97439600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:97424400-97439800	Weak transcription	Hela-S3	cervix
48	chr10:97424400-97440200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr10:97424400-97440200	Weak transcription	Rectal Smooth Muscle	rectum
50	chr10:97424400-97440800	Weak transcription	Right Ventricle	heart

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