Variant report

Variant	rs546488787
Chromosome Location	chr10:97436632-97436633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97419292..97421697-chr10:97434103..97436890,2	K562	blood:
2	chr10:97414503..97416474-chr10:97435645..97437275,2	K562	blood:
3	chr10:97432190..97434471-chr10:97435814..97437610,2	K562	blood:
4	chr10:97419292..97421837-chr10:97434385..97436890,2	K562	blood:
5	chr10:97425900..97430899-chr10:97432163..97436745,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000059573	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv526761	chr10:97436393-97438823	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97416600-97441000	Weak transcription	Spleen	Spleen
2	chr10:97416800-97441600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:97416800-97442400	Weak transcription	Small Intestine	intestine
4	chr10:97416800-97443400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:97417000-97437400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:97417000-97439800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:97417000-97439800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:97417000-97439800	Weak transcription	Brain Substantia Nigra	brain
9	chr10:97417000-97441000	Weak transcription	HSMMtube	muscle
10	chr10:97417000-97442400	Weak transcription	Aorta	Aorta
11	chr10:97417000-97444200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:97417000-97445200	Weak transcription	Colonic Mucosa	Colon
13	chr10:97417000-97445800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:97417000-97445800	Weak transcription	NHLF	lung
15	chr10:97417200-97437400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:97417200-97438800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:97417200-97438800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:97417200-97439000	Weak transcription	Fetal Brain Male	brain
19	chr10:97417200-97439600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:97417200-97439800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr10:97417200-97440000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:97417200-97441000	Weak transcription	Thymus	Thymus
23	chr10:97417200-97441800	Weak transcription	Brain Angular Gyrus	brain
24	chr10:97417200-97442400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr10:97417200-97444400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr10:97417200-97445800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:97417400-97439800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:97417600-97439000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr10:97421800-97441800	Weak transcription	Gastric	stomach
30	chr10:97423000-97452000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:97423600-97439000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr10:97423600-97441000	Weak transcription	Lung	lung
33	chr10:97423600-97441800	Weak transcription	Esophagus	oesophagus
34	chr10:97424000-97439600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr10:97424000-97440000	Weak transcription	Psoas Muscle	Psoas
36	chr10:97424000-97448200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr10:97424200-97437200	Weak transcription	Liver	Liver
38	chr10:97424200-97437400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr10:97424200-97438800	Weak transcription	Primary B cells from cord blood	blood
40	chr10:97424200-97439600	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:97424200-97440600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:97424400-97437400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr10:97424400-97437400	Weak transcription	NHEK	skin
44	chr10:97424400-97439600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:97424400-97439800	Weak transcription	Hela-S3	cervix
46	chr10:97424400-97440200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:97424400-97440200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr10:97424400-97440800	Weak transcription	Right Ventricle	heart
49	chr10:97424400-97443200	Weak transcription	Pancreas	Pancrea
50	chr10:97424600-97437400	Weak transcription	Brain Anterior Caudate	brain

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