Variant report

Variant	nsv527254
Chromosome Location	chr11:101960899-101962775
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:101956417..101958506-chr11:101959767..101962637,2	MCF-7	breast:
2	chr11:101959323..101961046-chr11:101966709..101968347,2	K562	blood:
3	chr11:101959218..101961708-chr11:101971972..101974764,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:67 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1942684	chr11:101960899-101960900	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs533167650	chr11:101960987-101960988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs182725273	chr11:101961007-101961008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs556578456	chr11:101961008-101961009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs144145643	chr11:101961011-101961012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs576360501	chr11:101961030-101961031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs529456846	chr11:101961071-101961072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs549589128	chr11:101961077-101961078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs147295779	chr11:101961102-101961103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs78218075	chr11:101961112-101961113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs558502702	chr11:101961116-101961117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs571221419	chr11:101961130-101961131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs59695661	chr11:101961400-101961401	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs556774001	chr11:101961414-101961415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs573719075	chr11:101961516-101961517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs542439828	chr11:101961539-101961540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs553106369	chr11:101961559-101961560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs79783720	chr11:101961572-101961573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs544865958	chr11:101961616-101961617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs558379388	chr11:101961691-101961692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs553733056	chr11:101961757-101961758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs376217250	chr11:101961761-101961762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs564841423	chr11:101961789-101961790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs374171712	chr11:101961790-101961791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs189037547	chr11:101961823-101961824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs73593099	chr11:101961837-101961838	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs573740108	chr11:101961879-101961880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs529418042	chr11:101961891-101961892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs542362118	chr11:101961952-101961953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs549230951	chr11:101961979-101961980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs76878675	chr11:101961982-101961983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs142550774	chr11:101962005-101962006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs10895250	chr11:101962058-101962059	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs192051331	chr11:101962059-101962060	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs183590643	chr11:101962073-101962074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs187422780	chr11:101962078-101962079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs150528200	chr11:101962101-101962102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs536314136	chr11:101962108-101962109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs552804760	chr11:101962117-101962118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs374912760	chr11:101962118-101962119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs10895251	chr11:101962130-101962131	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs139521292	chr11:101962134-101962135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs117041771	chr11:101962167-101962168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs543431576	chr11:101962192-101962193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs115527676	chr11:101962193-101962194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs202035430	chr11:101962198-101962199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs200199402	chr11:101962199-101962200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs147045131	chr11:101962200-101962201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs398097778	chr11:101962203-101962204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs573964554	chr11:101962215-101962216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Melanoma	22183965	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Mantle cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal cancer	21851588	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Intracranial ependymoma	16609018	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Cancer	20164919	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101955200-101963600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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