Variant report
| Variant | rs73593099 |
|---|---|
| Chromosome Location | chr11:101961837-101961838 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:101956417..101958506-chr11:101959767..101962637,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11824945 | 1.00[ASN][1000 genomes] |
| rs12417666 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17097406 | 1.00[ASN][1000 genomes] |
| rs17688499 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17761725 | 1.00[ASN][1000 genomes] |
| rs4754036 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4754037 | 1.00[ASN][1000 genomes] |
| rs58795913 | 1.00[ASN][1000 genomes] |
| rs59695661 | 1.00[ASN][1000 genomes] |
| rs60312944 | 1.00[ASN][1000 genomes] |
| rs60690617 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73593082 | 1.00[ASN][1000 genomes] |
| rs73593084 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73593085 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73593091 | 1.00[ASN][1000 genomes] |
| rs73593096 | 1.00[ASN][1000 genomes] |
| rs7936815 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3362945 | chr11:101736547-102114246 | Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv898333 | chr11:101832670-102079986 | Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv527254 | chr11:101960899-101962775 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:101955200-101963600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
