Variant report

Variant	rs12417666
Chromosome Location	chr11:101955545-101955546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11824945	1.00[ASN][1000 genomes]
rs12420608	1.00[JPT][hapmap]
rs17097406	1.00[ASN][1000 genomes]
rs17688499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17761725	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754036	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4754037	1.00[ASN][1000 genomes]
rs58795913	1.00[ASN][1000 genomes]
rs59695661	1.00[ASN][1000 genomes]
rs60312944	1.00[ASN][1000 genomes]
rs60690617	1.00[ASN][1000 genomes]
rs73593082	1.00[ASN][1000 genomes]
rs73593084	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73593085	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73593091	1.00[ASN][1000 genomes]
rs73593096	1.00[ASN][1000 genomes]
rs73593099	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7936815	1.00[ASN][1000 genomes]
rs948736	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101919400-101956800	Weak transcription	Osteobl	bone
2	chr11:101922400-101958000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:101944200-101956400	Weak transcription	Ovary	ovary
4	chr11:101945400-101956600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:101946600-101956800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:101951800-101955600	Weak transcription	HepG2	liver
7	chr11:101953600-101956600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:101955200-101956400	Enhancers	A549	lung
9	chr11:101955200-101963600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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