Variant report

Variant	nsv536630
Chromosome Location	chr3:86701703-86792434
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:31)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:31 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
2	lnc-CHMP2B-2	chr3:86708248-86708384	XLOC_002725
3	lnc-CHMP2B-2	chr3:86708206-86708384	XLOC_002725
4	lnc-CHMP2B-2	chr3:86760800-86760938	XLOC_002725
5	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
6	lnc-CHMP2B-2	chr3:86768368-86769064	XLOC_002725
7	lnc-CHMP2B-2	chr3:86771630-86771837	NONHSAT090674
8	lnc-CHMP2B-2	chr3:86771631-86771837	XLOC_002725
9	lnc-CHMP2B-2	chr3:86771631-86771837	XLOC_002725
10	lnc-CHMP2B-2	chr3:86769945-86770054	XLOC_002725
11	lnc-CHMP2B-2	chr3:86786328-86786371	NONHSAT090678
12	lnc-CHMP2B-2	chr3:86760799-86760938	NONHSAT090674
13	lnc-CHMP2B-2	chr3:86769941-86770054	XLOC_002725
14	lnc-CHMP2B-2	chr3:86766576-86766677	NONHSAT090678
15	lnc-CHMP2B-2	chr3:86768368-86768498	XLOC_002725
16	lnc-CHMP2B-2	chr3:86771631-86771837	XLOC_002725
17	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
18	lnc-CHMP2B-2	chr3:86766575-86766677	NONHSAT090674
19	lnc-CHMP2B-2	chr3:86708205-86708384	NONHSAT090674
20	lnc-CHMP2B-2	chr3:86729264-86729335	NONHSAT090674
21	lnc-CHMP2B-2	chr3:86769941-86770054	XLOC_002725
22	lnc-CHMP2B-2	chr3:86708248-86708384	XLOC_002725
23	lnc-CHMP2B-2	chr3:86729265-86729335	XLOC_002725
24	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
25	lnc-CHMP2B-2	chr3:86768368-86768678	XLOC_002725
26	lnc-CHMP2B-2	chr3:86768368-86768498	XLOC_002725
27	lnc-CHMP2B-2	chr3:86760800-86760938	XLOC_002725
28	lnc-CHMP2B-2	chr3:86708291-86708384	NONHSAT090678
29	lnc-CHMP2B-2	chr3:86768367-86769064	NONHSAT090674
30	lnc-CHMP2B-2	chr3:86769940-86770054	NONHSAT090674
31	lnc-CHMP2B-4	chr3:86790896-86791074	l_2406_chr3:86790895-86851827_testes

No data

Variant related genes	Relation type
AHR	miRNA target sites
TRIM8	miRNA target sites
ZFYVE27	miRNA target sites
MRPL42	miRNA target sites
POLA1	miRNA target sites
MCL1	miRNA target sites
LCLAT1	miRNA target sites
PTEN	miRNA target sites
C15orf57	miRNA target sites
C14orf178	miRNA target sites
PLOD3	miRNA target sites

Extended variants
information (count: 888 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:888 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569182444	chr3:86701703-86701704	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs116544320	chr3:86701737-86701738	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs548396168	chr3:86701764-86701765	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs138269531	chr3:86701791-86701792	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs180897288	chr3:86701816-86701817	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs558636427	chr3:86701844-86701845	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs576916402	chr3:86701857-86701858	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs553674515	chr3:86701861-86701862	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs537886615	chr3:86701927-86701928	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs73152722	chr3:86701944-86701945	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs183522419	chr3:86701946-86701947	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs35611364	chr3:86701975-86701976	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs149484403	chr3:86701991-86701992	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs188650624	chr3:86702033-86702034	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs560336843	chr3:86702115-86702116	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs370997952	chr3:86702119-86702120	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs143057708	chr3:86702125-86702126	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs568264932	chr3:86702134-86702135	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs542543663	chr3:86702173-86702174	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs545904037	chr3:86702196-86702197	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs377012746	chr3:86702198-86702199	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs148197598	chr3:86702208-86702209	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs62262353	chr3:86702275-86702276	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs543830465	chr3:86702322-86702323	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs115435562	chr3:86702324-86702325	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs530015127	chr3:86702366-86702367	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs548155760	chr3:86702373-86702374	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs9868939	chr3:86702446-86702447	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs527442183	chr3:86702538-86702539	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs552390778	chr3:86702539-86702540	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs570607635	chr3:86702542-86702543	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs539269454	chr3:86702608-86702609	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs9849686	chr3:86702627-86702628	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs9869426	chr3:86702716-86702717	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs567935283	chr3:86702738-86702739	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs536150947	chr3:86702750-86702751	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs373040474	chr3:86702754-86702755	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs551977925	chr3:86702794-86702795	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs554004378	chr3:86702800-86702801	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs77883823	chr3:86702803-86702804	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs9811859	chr3:86702807-86702808	Enhancers Weak transcription Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs147348676	chr3:86702811-86702812	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs371545100	chr3:86702817-86702818	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs543514920	chr3:86702823-86702824	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs555387571	chr3:86702888-86702889	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs562131812	chr3:86702894-86702895	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs371425327	chr3:86702954-86702955	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs571954845	chr3:86702957-86702958	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs529224677	chr3:86702978-86702979	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs374332899	chr3:86702986-86702987	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Melanoma	18172304	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Soft tissue tumor	16732325	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Mental retardation	17124404	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86696600-86701800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:86700800-86708200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:86701200-86702000	Enhancers	Brain Germinal Matrix	brain
4	chr3:86701400-86701800	Enhancers	Fetal Brain Female	brain
5	chr3:86701800-86704400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:86702000-86702400	Weak transcription	Brain Germinal Matrix	brain
7	chr3:86702400-86703000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:86702400-86703000	Enhancers	Brain Germinal Matrix	brain
9	chr3:86702600-86702800	Enhancers	Fetal Intestine Large	intestine
10	chr3:86702600-86702800	Enhancers	Fetal Intestine Small	intestine
11	chr3:86702600-86703200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:86702600-86703200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:86702600-86703200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr3:86702600-86703200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:86702600-86703400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:86702800-86703200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr3:86702800-86703200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr3:86702800-86703200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr3:86702800-86703400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr3:86702800-86703400	Active TSS	Fetal Intestine Large	intestine
21	chr3:86702800-86703400	Active TSS	Fetal Intestine Small	intestine
22	chr3:86703000-86707200	Weak transcription	Brain Germinal Matrix	brain
23	chr3:86703200-86704200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr3:86703400-86703600	Enhancers	Fetal Intestine Small	intestine
25	chr3:86704200-86704400	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr3:86707200-86708400	Enhancers	Brain Germinal Matrix	brain
27	chr3:86707800-86708400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr3:86720600-86721600	Enhancers	Fetal Intestine Large	intestine
29	chr3:86722200-86722800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr3:86742400-86742600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:86742600-86742800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr3:86742800-86743600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:86743200-86743800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr3:86743200-86744000	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr3:86743400-86743600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr3:86743400-86743600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr3:86743600-86744400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr3:86743600-86744800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr3:86743800-86749800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr3:86744400-86745000	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr3:86744400-86745400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr3:86744800-86745000	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr3:86745000-86745800	Active TSS	H1 Cell Line	embryonic stem cell
44	chr3:86745000-86746000	Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr3:86745000-86746000	Active TSS	H9 Cell Line	embryonic stem cell
46	chr3:86745000-86746000	Active TSS	HUES48 Cell Line	embryonic stem cell
47	chr3:86745000-86746000	Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr3:86745000-86746200	Active TSS	iPS-15b Cell Line	embryonic stem cell
49	chr3:86745200-86746000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
50	chr3:86745400-86745600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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