Variant report

Variant	rs555387571
Chromosome Location	chr3:86702888-86702889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1829775	chr3:86534927-86822085	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv877117	chr3:86665408-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1009339	chr3:86673173-86725713	Weak transcription Enhancers ZNF genes & repeats Active TSS	lncRNA	2 gene(s)	inside rSNPs	n/a
5	esv1794028	chr3:86684769-86822085	Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	11 gene(s)	inside rSNPs	n/a
6	esv1827728	chr3:86684769-86822085	Enhancers Weak transcription ZNF genes & repeats Active TSS	lncRNA	11 gene(s)	inside rSNPs	n/a
7	nsv1005747	chr3:86701703-86792434	Enhancers Active TSS ZNF genes & repeats Weak transcription	lncRNA	11 gene(s)	inside rSNPs	n/a
8	nsv536630	chr3:86701703-86792434	Weak transcription ZNF genes & repeats Enhancers Active TSS	lncRNA	11 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86700800-86708200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:86701800-86704400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:86702400-86703000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:86702400-86703000	Enhancers	Brain Germinal Matrix	brain
5	chr3:86702600-86703200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:86702600-86703200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:86702600-86703200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:86702600-86703200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:86702600-86703400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:86702800-86703200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:86702800-86703200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr3:86702800-86703200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:86702800-86703400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:86702800-86703400	Active TSS	Fetal Intestine Large	intestine
15	chr3:86702800-86703400	Active TSS	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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