Variant report

Variant	nsv538097
Chromosome Location	chr6:2038843-2142395
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:715)
CpG islands
(count:305)
Chromatin interactive
region (count:42)
LncRNA
region (count:30)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:715 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:2054021-2054064	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:2104544-2104926	HepG2	liver:	n/a	n/a
3	ATF1	chr6:2127958-2128208	K562	blood:	n/a	n/a
4	ATF1	chr6:2063914-2064084	K562	blood:	n/a	n/a
5	ATF1	chr6:2124471-2124901	K562	blood:	n/a	n/a
6	ATF2	chr6:2079063-2079591	GM12878	blood:	n/a	n/a
7	ATF2	chr6:2081607-2082134	GM12878	blood:	n/a	n/a
8	ATF2	chr6:2127588-2128027	GM12878	blood:	n/a	n/a
9	ATF2	chr6:2110844-2112017	GM12878	blood:	n/a	n/a
10	ATF2	chr6:2111114-2112016	GM12878	blood:	n/a	n/a
11	ATF2	chr6:2129176-2129995	GM12878	blood:	n/a	n/a
12	ATF2	chr6:2129217-2129887	GM12878	blood:	n/a	n/a
13	ATF3	chr6:2111370-2111777	HCT-116	colon:	n/a	chr6:2111530-2111545 chr6:2111531-2111544
14	BATF	chr6:2111319-2111990	GM12878	blood:	n/a	chr6:2111639-2111650 chr6:2111531-2111544
15	BATF	chr6:2111329-2111889	GM12878	blood:	n/a	chr6:2111639-2111650 chr6:2111531-2111544
16	BCL11A	chr6:2111331-2111731	GM12878	blood:	n/a	chr6:2111638-2111647 chr6:2111639-2111648 chr6:2111589-2111598
17	BCL11A	chr6:2079176-2079524	GM12878	blood:	n/a	n/a
18	BCL11A	chr6:2111264-2111905	GM12878	blood:	n/a	chr6:2111638-2111647 chr6:2111639-2111648 chr6:2111589-2111598 chr6:2111822-2111831
19	BCL3	chr6:2129238-2129889	GM12878	blood:	n/a	n/a
20	BCLAF1	chr6:2111435-2111937	GM12878	blood:	n/a	chr6:2111638-2111647 chr6:2111639-2111648 chr6:2111589-2111598 chr6:2111822-2111831
21	BCLAF1	chr6:2129190-2129959	GM12878	blood:	n/a	n/a
22	BCLAF1	chr6:2104414-2104922	GM12878	blood:	n/a	n/a
23	BHLHE40	chr6:2124551-2124863	K562	blood:	n/a	n/a
24	BHLHE40	chr6:2048167-2048485	HepG2	liver:	n/a	n/a
25	BHLHE40	chr6:2081674-2082026	GM12878	blood:	n/a	n/a
26	BHLHE40	chr6:2095378-2095459	K562	blood:	n/a	n/a
27	BHLHE40	chr6:2111337-2111790	GM12878	blood:	n/a	n/a
28	BHLHE40	chr6:2110839-2111080	GM12878	blood:	n/a	n/a
29	BHLHE40	chr6:2087299-2087385	GM12878	blood:	n/a	n/a
30	BRCA1	chr6:2072748-2073063	Hela-S3	cervix:	n/a	n/a
31	BRCA1	chr6:2132596-2133098	Hela-S3	cervix:	n/a	n/a
32	CBX3	chr6:2132527-2133153	HCT-116	colon:	n/a	n/a
33	CBX3	chr6:2111370-2111903	HCT-116	colon:	n/a	n/a
34	CCNT2	chr6:2126528-2126717	K562	blood:	n/a	n/a
35	CEBPB	chr6:2048113-2048435	HepG2	liver:	n/a	chr6:2048259-2048270
36	CEBPB	chr6:2111381-2111838	HCT-116	colon:	n/a	chr6:2111391-2111404
37	CEBPB	chr6:2124476-2124747	IMR90	lung:	n/a	n/a
38	CEBPB	chr6:2104032-2104300	Hela-S3	cervix:	n/a	chr6:2104116-2104129
39	CEBPB	chr6:2140817-2141149	H1-hESC	embryonic stem cell:	n/a	n/a
40	CEBPB	chr6:2132550-2133091	Hela-S3	cervix:	n/a	n/a
41	CEBPB	chr6:2102627-2102934	A549	lung:	n/a	chr6:2102739-2102750
42	CEBPB	chr6:2102575-2102958	A549	lung:	n/a	chr6:2102739-2102750
43	CEBPB	chr6:2102573-2102921	HepG2	liver:	n/a	chr6:2102739-2102750
44	CEBPB	chr6:2054026-2054178	HepG2	liver:	n/a	chr6:2054100-2054111 chr6:2054099-2054110 chr6:2054099-2054110
45	CEBPB	chr6:2105462-2105680	HepG2	liver:	n/a	chr6:2105610-2105623
46	CEBPB	chr6:2101669-2101729	A549	lung:	n/a	n/a
47	CEBPB	chr6:2053964-2054391	HepG2	liver:	n/a	chr6:2054100-2054111 chr6:2054099-2054110 chr6:2054099-2054110
48	CEBPB	chr6:2111258-2111935	GM12878	blood:	n/a	chr6:2111391-2111404
49	CEBPB	chr6:2132497-2133246	HCT-116	colon:	n/a	n/a
50	CEBPB	chr6:2072688-2073130	Hela-S3	cervix:	n/a	n/a

(count:305 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:2110875-2110925	SK-N-MC	brain:	n/a
2	chr6:2104322-2104372	HCT-116	colon:	n/a
3	chr6:2110875-2110925	HCM	heart:	n/a
4	chr6:2141241-2141291	AG10803	skin:	n/a
5	chr6:2110875-2110925	A549	lung:	n/a
6	chr6:2141241-2141291	Hela-S3	cervix:	n/a
7	chr6:2141241-2141291	ovcar-3	ovarian:	n/a
8	chr6:2134144-2134194	HEK293	kidney:	embryo
9	chr6:2110875-2110925	HCF	heart:	n/a
10	chr6:2104322-2104372	IMR90	lung:	fetal
11	chr6:2063957-2064007	HIPEpiC	eye:	n/a
12	chr6:2141241-2141291	H1-hESC	embryonic stem cell:	embryo
13	chr6:2104322-2104372	HCF	heart:	n/a
14	chr6:2063957-2064007	NB4	blood:	n/a
15	chr6:2141241-2141291	GM19239	blood:	n/a
16	chr6:2063957-2064007	Jurkat	blood:	n/a
17	chr6:2104322-2104372	GM12892	blood:	n/a
18	chr6:2134144-2134194	SAEC	small airway:	n/a
19	chr6:2110875-2110925	NH-A	brain:	n/a
20	chr6:2104322-2104372	PrEC	prostate:	n/a
21	chr6:2104322-2104372	GM19239	blood:	n/a
22	chr6:2141241-2141291	Caco-2	colon:	n/a
23	chr6:2134144-2134194	HL-60	blood:	n/a
24	chr6:2104322-2104372	NHBE	bronchial:	n/a
25	chr6:2110875-2110925	H1-hESC	embryonic stem cell:	embryo
26	chr6:2141241-2141291	AG09309	skin:	n/a
27	chr6:2110875-2110925	GM19239	blood:	n/a
28	chr6:2104322-2104372	RPTEC	kidney:	n/a
29	chr6:2141241-2141291	PrEC	prostate:	n/a
30	chr6:2141241-2141291	HRE	kidney:	n/a
31	chr6:2063957-2064007	HL-60	blood:	n/a
32	chr6:2063957-2064007	PrEC	prostate:	n/a
33	chr6:2110875-2110925	U87	brain:	n/a
34	chr6:2134144-2134194	GM12878	blood:	n/a
35	chr6:2063957-2064007	NH-A	brain:	n/a
36	chr6:2134144-2134194	PrEC	prostate:	n/a
37	chr6:2063957-2064007	ECC-1	luminal epithelium:	n/a
38	chr6:2104322-2104372	HCPEpiC	choroid plexus:	n/a
39	chr6:2134144-2134194	HEEpiC	esophagus:	n/a
40	chr6:2063957-2064007	HCPEpiC	choroid plexus:	n/a
41	chr6:2063957-2064007	SKMC	muscle:	n/a
42	chr6:2110875-2110925	HL-60	blood:	n/a
43	chr6:2110875-2110925	HNPCEpiC	eye:	n/a
44	chr6:2141241-2141291	NT2-D1	testis:	n/a
45	chr6:2063957-2064007	SK-N-SH	brain:	n/a
46	chr6:2063957-2064007	NHDF-neo	bronchial:	n/a
47	chr6:2063957-2064007	HRPEpiC	eye:	n/a
48	chr6:2104322-2104372	GM06990	blood:	n/a
49	chr6:2104322-2104372	HRCEpiC	kidney:	n/a
50	chr6:2104322-2104372	PANC-1	pancreas:	n/a

(count:42 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:2076391..2078469-chr6:2091267..2093676,2	MCF-7	breast:
2	chr6:2107952..2110679-chr6:2111605..2113236,2	MCF-7	breast:
3	chr6:1607774..1610426-chr6:2098410..2101344,2	MCF-7	breast:
4	chr6:1616379..1619156-chr6:2096704..2099403,2	MCF-7	breast:
5	chr6:2081922..2083588-chr6:2088961..2091628,2	MCF-7	breast:
6	chr6:2040794..2041414-chr6:2132566..2133423,2	MCF-7	breast:
7	chr6:1609442..1611153-chr6:2038341..2040817,2	MCF-7	breast:
8	chr6:2110933..2112552-chr6:2126239..2128267,2	MCF-7	breast:
9	chr6:2119577..2122402-chr6:2352666..2355381,2	MCF-7	breast:
10	chr6:1641104..1642209-chr6:2040485..2041851,20	MCF-7	breast:
11	chr6:2053179..2055343-chr6:2055921..2058664,2	K562	blood:
12	chr6:1609035..1611562-chr6:2103045..2105968,3	MCF-7	breast:
13	chr6:2053179..2055343-chr6:2055921..2058664,2	K562	blood:
14	chr6:1610117..1612459-chr6:2103517..2106482,4	MCF-7	breast:
15	chr6:2076391..2078469-chr6:2091267..2093676,2	MCF-7	breast:
16	chr6:2102993..2105699-chr6:2107973..2110016,2	K562	blood:
17	chr6:1604255..1605544-chr6:2104014..2105193,5	K562	blood:
18	chr6:1641472..1642157-chr6:2040778..2041465,3	MCF-7	breast:
19	chr6:1641339..1642209-chr6:2040485..2041381,10	MCF-7	breast:
20	chr6:2040794..2041414-chr6:2132566..2133423,2	MCF-7	breast:
21	chr6:2081922..2083588-chr6:2088961..2091628,2	MCF-7	breast:
22	chr6:2133819..2135581-chr6:2140564..2142589,2	K562	blood:
23	chr6:2134081..2137218-chr6:2139617..2142589,3	K562	blood:
24	chr6:1612494..1615565-chr6:2103145..2107069,5	MCF-7	breast:
25	chr6:2130543..2132757-chr6:2133403..2136232,3	K562	blood:
26	chr6:2110933..2112552-chr6:2126239..2128267,2	MCF-7	breast:
27	chr6:1607577..1610037-chr6:2107747..2109346,3	MCF-7	breast:
28	chr6:2128247..2132613-chr6:2133683..2136448,4	K562	blood:
29	chr6:2134081..2137218-chr6:2139617..2142589,3	K562	blood:
30	chr6:2133819..2135581-chr6:2140564..2142589,2	K562	blood:
31	chr6:2070854..2072589-chr6:2073721..2075447,2	K562	blood:
32	chr6:1608030..1611197-chr6:2098990..2102744,3	MCF-7	breast:
33	chr6:1596571..1597477-chr6:2104218..2105175,4	K562	blood:
34	chr6:2130543..2132757-chr6:2133403..2136232,3	K562	blood:
35	chr6:2128247..2132613-chr6:2133683..2136448,4	K562	blood:
36	chr6:2040678..2043654-chr6:2103622..2106281,2	MCF-7	breast:
37	chr6:2040678..2043654-chr6:2103622..2106281,2	MCF-7	breast:
38	chr6:2107952..2110679-chr6:2111605..2113236,2	MCF-7	breast:
39	chr6:2070854..2072589-chr6:2073721..2075447,2	K562	blood:
40	chr6:2034659..2036744-chr6:2038441..2040012,2	K562	blood:
41	chr6:1604456..1604957-chr6:2104229..2104835,2	MCF-7	breast:
42	chr6:2102993..2105699-chr6:2107973..2110016,2	K562	blood:

(count:30 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOXC1-12	chr6:2106666-2106822	NONHSAT106600
2	lnc-FOXC1-12	chr6:2107466-2107557	NONHSAT106599
3	lnc-FOXC1-12	chr6:2125895-2126649	NONHSAT106599
4	lnc-FOXC1-12	chr6:2122596-2122839	NONHSAT106600
5	lnc-FOXC1-12	chr6:2107290-2107350	NONHSAT106599
6	lnc-FOXC1-12	chr6:2120363-2120431	NONHSAT106599
7	lnc-FOXC1-12	chr6:2122596-2124499	NONHSAT106601
8	lnc-FOXC1-12	chr6:2107466-2107557	NONHSAT106601
9	lnc-FOXC1-12	chr6:2120205-2120250	NONHSAT106601
10	lnc-FOXC1-12	chr6:2120205-2120250	NONHSAT106600
11	lnc-FOXC1-12	chr6:2106666-2106822	NONHSAT106599
12	lnc-FOXC1-12	chr6:2122004-2122075	NONHSAT106600
13	lnc-FOXC1-12	chr6:2123357-2124499	NONHSAT106600
14	lnc-FOXC1-12	chr6:2122004-2122075	NONHSAT106599
15	lnc-FOXC1-12	chr6:2108159-2108260	NONHSAT106599
16	lnc-FOXC1-12	chr6:2106666-2106822	NONHSAT106601
17	lnc-FOXC1-12	chr6:2107466-2107557	NONHSAT106600
18	lnc-FOXC1-12	chr6:2107681-2107741	NONHSAT106599
19	lnc-FOXC1-12	chr6:2107862-2107975	NONHSAT106599
20	lnc-FOXC1-12	chr6:2108159-2108260	NONHSAT106601
21	lnc-FOXC1-12	chr6:2107290-2107350	NONHSAT106600
22	lnc-FOXC1-12	chr6:2108159-2108260	NONHSAT106600
23	lnc-FOXC1-12	chr6:2107862-2107975	NONHSAT106601
24	lnc-FOXC1-12	chr6:2125723-2125802	NONHSAT106599
25	lnc-FOXC1-12	chr6:2120205-2120250	NONHSAT106599
26	lnc-FOXC1-12	chr6:2122004-2122075	NONHSAT106601
27	lnc-FOXC1-12	chr6:2107681-2107741	NONHSAT106600
28	lnc-FOXC1-12	chr6:2107290-2107350	NONHSAT106601
29	lnc-FOXC1-12	chr6:2107681-2107741	NONHSAT106601
30	lnc-FOXC1-12	chr6:2107862-2107975	NONHSAT106600

No data

Variant related genes	Relation type
GMDS	TF binding region
GMDS	CpG island
ENSG00000054598	chromatin interactions

Extended variants
information (count: 3960 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:3960 , 50 per page) page: 1 2 3 4 5 6 7 ... 80

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551796418	chr6:2038866-2038867	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs138222898	chr6:2038891-2038892	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs115826205	chr6:2038909-2038910	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs188771099	chr6:2038926-2038927	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs151160816	chr6:2038941-2038942	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs201143200	chr6:2038942-2038943	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs558012047	chr6:2039008-2039009	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs9503076	chr6:2039027-2039028	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs9503077	chr6:2039044-2039045	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs563714445	chr6:2039057-2039058	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs59952501	chr6:2039081-2039082	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs73716926	chr6:2039092-2039093	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs2449978	chr6:2039101-2039102	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs2449977	chr6:2039154-2039155	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs111987362	chr6:2039187-2039188	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs561946194	chr6:2039196-2039197	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs527522327	chr6:2039200-2039201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs2449976	chr6:2039268-2039269	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs531151710	chr6:2039286-2039287	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs193067865	chr6:2039291-2039292	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs2504726	chr6:2039293-2039294	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs564079313	chr6:2039296-2039297	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs7771523	chr6:2039304-2039305	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs149287458	chr6:2039314-2039315	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs3004058	chr6:2039346-2039347	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs2449975	chr6:2039354-2039355	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs569333993	chr6:2039364-2039365	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs184569508	chr6:2039384-2039385	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs562148034	chr6:2039427-2039428	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs144557724	chr6:2039458-2039459	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs187832657	chr6:2039511-2039512	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs530108200	chr6:2039533-2039534	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs148473849	chr6:2039594-2039595	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs571712725	chr6:2039702-2039703	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs546974913	chr6:2039727-2039728	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs557151436	chr6:2039736-2039737	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs574115728	chr6:2039817-2039818	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs369245112	chr6:2039831-2039832	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs573049851	chr6:2039842-2039843	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs543033354	chr6:2039854-2039855	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs555746443	chr6:2039858-2039859	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs566873043	chr6:2039881-2039882	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs572373228	chr6:2039905-2039906	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs191090810	chr6:2039948-2039949	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs564322245	chr6:2040017-2040018	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs115863455	chr6:2040047-2040048	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs372106454	chr6:2040092-2040093	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs543534710	chr6:2040095-2040096	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs183639693	chr6:2040103-2040104	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs145311036	chr6:2040156-2040157	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Prader-willi syndrome	20588305	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Developmental delay	19490664	CNVD
Cancer	21183584	CNVD
Multiple Epiphyseal Dysplasia	20877625	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Glaucoma	18694899	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	17603634	CNVD
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Lung cancer	18438408	CNVD
Bladder cancer	21909424	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	20164919	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
small cell lung cancer	20016488	CNVD
Autism	22495311	CNVD
Autism	21448237	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
early-passage human iPS cells	21368824	CNVD
Gastric cancer	22315472	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:813 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:2019800-2040000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:2022400-2042800	Weak transcription	Right Atrium	heart
3	chr6:2022400-2055600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:2022400-2080600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:2029800-2040400	Weak transcription	Stomach Mucosa	stomach
6	chr6:2030000-2053600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:2031200-2039000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:2031800-2041800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:2032600-2043400	Weak transcription	HSMM	muscle
10	chr6:2034200-2044400	Weak transcription	Primary B cells from cord blood	blood
11	chr6:2035600-2052600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:2036400-2039000	Enhancers	Fetal Kidney	kidney
13	chr6:2037000-2039400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr6:2037000-2043800	Enhancers	Fetal Thymus	thymus
15	chr6:2037200-2039400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:2037200-2039600	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr6:2037200-2039600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:2037200-2039600	Enhancers	Fetal Lung	lung
19	chr6:2037400-2039600	Enhancers	Primary T cells fromperipheralblood	blood
20	chr6:2037400-2039600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:2037400-2039800	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr6:2037800-2039600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:2038000-2039200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:2038200-2039200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:2038200-2039600	Enhancers	Gastric	stomach
26	chr6:2038400-2039000	Enhancers	Primary hematopoietic stem cells	blood
27	chr6:2038400-2039200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr6:2038400-2039400	Genic enhancers	HepG2	liver
29	chr6:2038600-2039000	Enhancers	Dnd41	blood
30	chr6:2038600-2043800	Enhancers	Thymus	Thymus
31	chr6:2038800-2039400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:2038800-2039400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr6:2038800-2039800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr6:2038800-2041200	Enhancers	Primary T cells from cord blood	blood
35	chr6:2039000-2039200	Bivalent Enhancer	Fetal Kidney	kidney
36	chr6:2039000-2039200	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr6:2039000-2039400	Flanking Active TSS	Dnd41	blood
38	chr6:2039000-2044200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr6:2039200-2039800	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr6:2039400-2040400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:2039400-2041200	Enhancers	Dnd41	blood
42	chr6:2039400-2052600	Weak transcription	HepG2	liver
43	chr6:2039600-2040400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr6:2039600-2040600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:2039600-2040600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr6:2039800-2040200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr6:2039800-2040200	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr6:2039800-2040200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr6:2040200-2040600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr6:2040200-2040600	Enhancers	Primary T helper cells PMA-I stimulated	--

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