Variant report

Variant	rs564079313
Chromosome Location	chr6:2039296-2039297
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:1609442..1611153-chr6:2038341..2040817,2	MCF-7	breast:
2	chr6:2034659..2036744-chr6:2038441..2040012,2	K562	blood:

Variant related genes	Relation type
ENSG00000054598	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv931941	chr6:1768439-2246781	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
4	nsv1032727	chr6:1900622-2064690	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv538095	chr6:1900622-2064690	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv883386	chr6:1910108-2122454	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv981098	chr6:2008599-2102267	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv527735	chr6:2028237-2097654	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv522608	chr6:2032259-2203888	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1019227	chr6:2038843-2142395	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv538097	chr6:2038843-2142395	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:2019800-2040000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:2022400-2042800	Weak transcription	Right Atrium	heart
3	chr6:2022400-2055600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:2022400-2080600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:2029800-2040400	Weak transcription	Stomach Mucosa	stomach
6	chr6:2030000-2053600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:2031800-2041800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:2032600-2043400	Weak transcription	HSMM	muscle
9	chr6:2034200-2044400	Weak transcription	Primary B cells from cord blood	blood
10	chr6:2035600-2052600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:2037000-2039400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr6:2037000-2043800	Enhancers	Fetal Thymus	thymus
13	chr6:2037200-2039400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr6:2037200-2039600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr6:2037200-2039600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:2037200-2039600	Enhancers	Fetal Lung	lung
17	chr6:2037400-2039600	Enhancers	Primary T cells fromperipheralblood	blood
18	chr6:2037400-2039600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:2037400-2039800	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr6:2037800-2039600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:2038200-2039600	Enhancers	Gastric	stomach
22	chr6:2038400-2039400	Genic enhancers	HepG2	liver
23	chr6:2038600-2043800	Enhancers	Thymus	Thymus
24	chr6:2038800-2039400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:2038800-2039400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr6:2038800-2039800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr6:2038800-2041200	Enhancers	Primary T cells from cord blood	blood
28	chr6:2039000-2039400	Flanking Active TSS	Dnd41	blood
29	chr6:2039000-2044200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr6:2039200-2039800	Enhancers	Primary T helper cells PMA-I stimulated	--

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