Variant report

Variant	nsv538138
Chromosome Location	chr6:14774036-15044308
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:285)
LncRNA
region (count:15)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:285 , 50 per page) page: 1 2 3 4 5 6

No.	Distal block	Cell Line	Cell type
1	chr6:14788518..14794395-chr6:14794732..14800573,9	K562	blood:
2	chr6:14704103..14706988-chr6:14774601..14776285,2	K562	blood:
3	chr6:15005280..15007907-chr6:15011280..15013327,2	K562	blood:
4	chr6:14788518..14793706-chr6:14794732..14798301,6	K562	blood:
5	chr6:14800187..14801985-chr6:14803090..14804619,2	MCF-7	breast:
6	chr6:14888308..14890393-chr6:15254270..15256315,2	MCF-7	breast:
7	chr6:14879953..14882671-chr6:14890558..14892719,2	K562	blood:
8	chr6:14968413..14971364-chr6:14972284..14974772,2	K562	blood:
9	chr6:15028790..15031213-chr6:15245800..15247832,3	MCF-7	breast:
10	chr6:14789370..14790915-chr6:14793730..14795753,2	MCF-7	breast:
11	chr6:14919831..14923397-chr6:14924837..14928089,3	K562	blood:
12	chr6:14939582..14942478-chr6:15244119..15246436,2	MCF-7	breast:
13	chr6:14982576..14984441-chr6:14988390..14990025,2	MCF-7	breast:
14	chr6:14960895..14963438-chr6:14965726..14968229,3	K562	blood:
15	chr6:15015675..15017325-chr6:15020820..15023601,2	MCF-7	breast:
16	chr6:14787652..14790932-chr6:14791608..14794437,3	K562	blood:
17	chr6:14845916..14847475-chr6:14850133..14851997,2	MCF-7	breast:
18	chr6:14904460..14907062-chr6:14908136..14911069,2	K562	blood:
19	chr6:15036656..15037616-chr6:15251384..15252228,3	MCF-7	breast:
20	chr6:15014502..15016184-chr6:15471465..15473973,2	K562	blood:
21	chr6:14878630..14881043-chr6:14886019..14889778,3	K562	blood:
22	chr6:15014425..15017861-chr6:15018779..15021583,3	K562	blood:
23	chr6:14600846..14602352-chr6:14832527..14834089,2	K562	blood:
24	chr6:14968413..14971364-chr6:14972284..14974772,2	K562	blood:
25	chr6:14942820..14945395-chr6:14951980..14954411,2	K562	blood:
26	chr6:14873522..14875982-chr6:14876555..14879315,2	K562	blood:
27	chr6:15021640..15023757-chr6:15243450..15245673,2	MCF-7	breast:
28	chr6:14801951..14804468-chr6:14805275..14807028,2	MCF-7	breast:
29	chr6:14820856..14822740-chr6:14826682..14829114,2	K562	blood:
30	chr17:41465669..41466283-chr6:14881916..14882436,3	Hela-S3	cervix:
31	chr6:14889916..14891466-chr6:15090101..15091814,2	MCF-7	breast:
32	chr6:15023186..15025452-chr6:15025513..15027859,2	MCF-7	breast:
33	chr6:14881565..14884528-chr6:15089043..15091614,2	MCF-7	breast:
34	chr6:14823162..14824752-chr6:14829920..14831830,2	K562	blood:
35	chr6:15041630..15044094-chr6:15245777..15248149,2	MCF-7	breast:
36	chr6:14828090..14830220-chr6:14891865..14894171,2	MCF-7	breast:
37	chr6:14848163..14851630-chr6:14853306..14856689,6	K562	blood:
38	chr6:15023186..15025452-chr6:15025513..15027859,2	MCF-7	breast:
39	chr6:14942820..14945395-chr6:14951980..14954411,2	K562	blood:
40	chr6:15000392..15003019-chr6:15008822..15010417,2	K562	blood:
41	chr6:15036573..15037548-chr6:15089967..15091218,7	MCF-7	breast:
42	chr6:14879787..14882034-chr6:14922461..14924041,2	K562	blood:
43	chr6:15005280..15007907-chr6:15011280..15013327,2	K562	blood:
44	chr6:15034993..15036710-chr6:15070222..15072804,2	MCF-7	breast:
45	chr6:15036618..15037814-chr6:15222040..15222792,3	MCF-7	breast:
46	chr6:15039064..15039694-chr6:15090359..15090972,2	MCF-7	breast:
47	chr6:14811992..14814078-chr6:14819806..14821370,2	K562	blood:
48	chr6:14783331..14786327-chr6:14787187..14789673,2	K562	blood:
49	chr6:14988507..14990361-chr6:14990397..14992385,2	K562	blood:
50	chr6:14816647..14817275-chr6:15464243..15464812,2	K562	blood:

(count:15 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTNBP1-5	chr6:14876283-14876501	NONHSAT107859
2	lnc-DTNBP1-5	chr6:14977019-14977549	XLOC_005618
3	lnc-DTNBP1-5	chr6:15022047-15022238	NONHSAT107859
4	lnc-DTNBP1-5	chr6:14997647-14997706	NONHSAT107859
5	lnc-DTNBP1-5	chr6:14944653-14945314	NONHSAT107859
6	lnc-DTNBP1-5	chr6:14897165-14897607	NONHSAT107859
7	lnc-DTNBP1-5	chr6:14976467-14977549	NONHSAT107859
8	lnc-JARID2-1	chr6:14871911-14871959	ENSG00000231077
9	lnc-DTNBP1-5	chr6:14997647-14997706	XLOC_005618
10	lnc-DTNBP1-5	chr6:15009156-15009315	NONHSAT107859
11	lnc-DTNBP1-5	chr6:14874500-14875285	NONHSAT107859
12	lnc-DTNBP1-5	chr6:14861230-14861548	NONHSAT107859
13	lnc-JARID2-1	chr6:14841455-14841582	ENSG00000231077
14	lnc-DTNBP1-5	chr6:14861853-14862052	NONHSAT107859
15	lnc-DTNBP1-5	chr6:14790201-14790329	NONHSAT107859

No data

Variant related genes	Relation type
ENSG00000207359	chromatin interactions
ENSG00000154217	chromatin interactions
ENSG00000234261	chromatin interactions
ENSG00000164823	chromatin interactions
ENSG00000188825	chromatin interactions
ENSG00000008083	chromatin interactions
ENSG00000216754	chromatin interactions
ENSG00000271888	chromatin interactions
ENSG00000235488	chromatin interactions
FAM199X	miRNA target sites

Extended variants
information (count: 10459 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:10459 , 50 per page) page: 1 2 3 4 5 6 7 ... 210

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs565974319	chr6:14774129-14774130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs78206011	chr6:14774135-14774136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs9396532	chr6:14774154-14774155	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs567748474	chr6:14774175-14774176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs187363556	chr6:14774178-14774179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs150935671	chr6:14774204-14774205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs562541723	chr6:14774310-14774311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs9396533	chr6:14774311-14774312	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs539228689	chr6:14774315-14774316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs558941165	chr6:14774329-14774330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs111573976	chr6:14774369-14774370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs34288632	chr6:14774378-14774379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs189314230	chr6:14774402-14774403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560585538	chr6:14774450-14774451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs73357695	chr6:14774456-14774457	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs543160463	chr6:14774466-14774467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs138779020	chr6:14774482-14774483	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs532168059	chr6:14774497-14774498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs73357696	chr6:14774538-14774539	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs2500083	chr6:14774605-14774606	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs556576220	chr6:14774612-14774613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs553671109	chr6:14774616-14774617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs180810614	chr6:14774617-14774618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs576594467	chr6:14774627-14774628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs185207656	chr6:14774649-14774650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs61234694	chr6:14774663-14774664	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs536732832	chr6:14774748-14774749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs376949588	chr6:14774788-14774789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs550255139	chr6:14774844-14774845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs190311250	chr6:14774864-14774865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs538832518	chr6:14774896-14774897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs559124808	chr6:14774905-14774906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs369277891	chr6:14774914-14774915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs58342299	chr6:14774934-14774935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs575644202	chr6:14774951-14774952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs140337887	chr6:14775016-14775017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs116675235	chr6:14775083-14775084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs145506801	chr6:14775088-14775089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs543023935	chr6:14775100-14775101	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs376519404	chr6:14775124-14775125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs576886417	chr6:14775133-14775134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs138758858	chr6:14775136-14775137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs559526536	chr6:14775137-14775138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs145252297	chr6:14775188-14775189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs182502081	chr6:14775192-14775193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs143639339	chr6:14775233-14775234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs530066461	chr6:14775278-14775279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs74759176	chr6:14775319-14775320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs550224164	chr6:14775358-14775359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs530304566	chr6:14775404-14775405	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
small cell lung cancer	20016488	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Osteosarcoma	16790693	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Ovarian cancer	21720365	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Bladder cancer	21909424	CNVD
Burkitt''s lymphoma	19759907	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
abnormal development	18461090	CNVD
Cancer	16790693	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Glioma	20126413	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	21785460	CNVD

Chromatin state (count:3945 , 50 per page) page: 1 2 3 4 5 6 7 ... 79

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14763800-14777000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:14768000-14785200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:14768800-14775600	Weak transcription	Gastric	stomach
4	chr6:14771400-14775400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:14772000-14777800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:14772800-14775600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:14772800-14775600	Weak transcription	K562	blood
8	chr6:14772800-14775800	Weak transcription	A549	lung
9	chr6:14772800-14776800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:14772800-14777400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:14772800-14777600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:14772800-14777600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:14772800-14777600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:14772800-14777800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:14772800-14783800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:14773400-14777800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:14775400-14775600	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr6:14775400-14776000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:14775400-14776400	Enhancers	Liver	Liver
20	chr6:14775600-14775800	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:14775600-14775800	Enhancers	Gastric	stomach
22	chr6:14775600-14776600	Enhancers	K562	blood
23	chr6:14775600-14790000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:14775800-14776200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:14775800-14776400	Enhancers	A549	lung
26	chr6:14776200-14776600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
27	chr6:14776200-14777000	Enhancers	H9 Cell Line	embryonic stem cell
28	chr6:14776400-14777200	Flanking Active TSS	A549	lung
29	chr6:14776600-14776800	Flanking Active TSS	K562	blood
30	chr6:14776800-14777000	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr6:14776800-14777000	Enhancers	K562	blood
32	chr6:14777000-14777200	Flanking Active TSS	K562	blood
33	chr6:14777000-14777400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr6:14777000-14777400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:14777000-14777800	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr6:14777000-14777800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:14777200-14777600	Enhancers	K562	blood
38	chr6:14777200-14778000	Active TSS	A549	lung
39	chr6:14777400-14779000	Enhancers	H9 Cell Line	embryonic stem cell
40	chr6:14777400-14779200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:14777400-14779400	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr6:14777600-14777800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr6:14777600-14778200	Enhancers	HSMMtube	muscle
44	chr6:14777600-14778400	Flanking Active TSS	K562	blood
45	chr6:14777600-14778800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr6:14777600-14778800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:14777600-14778800	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr6:14777600-14778800	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr6:14777600-14778800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:14777600-14779000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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