Variant report

Variant	rs9396532
Chromosome Location	chr6:14774154-14774155
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1014609	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1014610	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2472804	0.91[ASN][1000 genomes]
rs2472805	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2472807	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2472812	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2472813	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2472814	0.83[ASN][1000 genomes]
rs2472815	0.86[ASN][1000 genomes]
rs2500080	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2500081	1.00[ASN][1000 genomes]
rs2500083	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2500084	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2500088	1.00[ASN][1000 genomes]
rs2500089	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2500090	0.86[ASN][1000 genomes]
rs2500091	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2500092	0.83[ASN][1000 genomes]
rs9396533	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14763800-14777000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:14768000-14785200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:14768800-14775600	Weak transcription	Gastric	stomach
4	chr6:14771400-14775400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:14772000-14777800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:14772800-14775600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:14772800-14775600	Weak transcription	K562	blood
8	chr6:14772800-14775800	Weak transcription	A549	lung
9	chr6:14772800-14776800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:14772800-14777400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:14772800-14777600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:14772800-14777600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:14772800-14777600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:14772800-14777800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:14772800-14783800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:14773400-14777800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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