Variant report

Variant	rs2500091
Chromosome Location	chr6:14790212-14790213
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:14788518..14793706-chr6:14794732..14798301,6	K562	blood:
2	chr6:14789370..14790915-chr6:14793730..14795753,2	MCF-7	breast:
3	chr6:14789015..14791833-chr6:14802497..14804530,2	K562	blood:
4	chr6:14777303..14779042-chr6:14788691..14791414,2	K562	blood:
5	chr6:14788518..14794395-chr6:14794732..14800573,9	K562	blood:
6	chr6:14787652..14790932-chr6:14791608..14794437,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTNBP1-5	chr6:14790201-14790329	NONHSAT107859

No data

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1014609	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1014610	0.83[ASN][1000 genomes]
rs2247548	0.85[EUR][1000 genomes]
rs233497	0.85[EUR][1000 genomes]
rs233498	0.85[EUR][1000 genomes]
rs233499	0.85[EUR][1000 genomes]
rs233500	0.85[EUR][1000 genomes]
rs233501	0.85[EUR][1000 genomes]
rs233502	0.85[EUR][1000 genomes]
rs233503	0.85[EUR][1000 genomes]
rs233505	0.82[EUR][1000 genomes]
rs2472812	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2472813	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2472814	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2472815	0.96[ASN][1000 genomes]
rs2472816	0.85[EUR][1000 genomes]
rs2472817	0.83[EUR][1000 genomes]
rs2500081	0.83[ASN][1000 genomes]
rs2500083	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2500084	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2500088	0.83[ASN][1000 genomes]
rs2500089	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2500090	0.96[ASN][1000 genomes]
rs2500092	1.00[ASN][1000 genomes]
rs383984	0.85[EUR][1000 genomes]
rs415133	0.85[EUR][1000 genomes]
rs550573	0.85[EUR][1000 genomes]
rs9396532	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9396533	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14785200-14792000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:14785400-14790400	Enhancers	H9 Cell Line	embryonic stem cell
3	chr6:14785400-14791200	Weak transcription	Brain Germinal Matrix	brain
4	chr6:14785600-14791800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:14785800-14792400	Weak transcription	Fetal Intestine Large	intestine
6	chr6:14786000-14790800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:14787600-14792800	Enhancers	Fetal Lung	lung
8	chr6:14787800-14802600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:14788200-14790400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:14788200-14791800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:14788600-14790800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:14789000-14790800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:14789000-14792800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:14789000-14798600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:14789200-14790400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:14789200-14790600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:14789200-14791000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:14789200-14791000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:14789200-14792600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:14789400-14792000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:14789800-14790600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:14789800-14791800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:14790000-14790600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:14790000-14790800	Enhancers	Fetal Heart	heart
25	chr6:14790000-14791400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr6:14790000-14791600	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr6:14790200-14790400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links