Variant report

Variant	rs2472805
Chromosome Location	chr6:14769234-14769235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14731280..14734259-chr6:14769117..14771517,2	MCF-7	breast:
2	chr6:14768705..14773334-chr6:14774992..14778664,5	K562	blood:
3	chr6:14761235..14763388-chr6:14768034..14770396,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1014609	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1014610	0.91[ASN][1000 genomes]
rs2472804	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2472807	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2472812	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2472813	0.91[ASN][1000 genomes]
rs2500080	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2500081	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2500083	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2500084	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2500088	0.91[ASN][1000 genomes]
rs2500089	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2500090	0.86[EUR][1000 genomes]
rs9396532	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9396533	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14760400-14772400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:14763000-14770400	Weak transcription	Adipose Nuclei	Adipose
3	chr6:14763600-14770600	Weak transcription	Left Ventricle	heart
4	chr6:14763800-14777000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:14764200-14770800	Weak transcription	Stomach Mucosa	stomach
6	chr6:14764200-14771000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:14765400-14770200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:14765600-14770400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:14766000-14770000	Weak transcription	NHLF	lung
10	chr6:14766000-14771200	Weak transcription	Placenta	Placenta
11	chr6:14766600-14770400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:14766600-14771000	Weak transcription	A549	lung
13	chr6:14767000-14769800	Weak transcription	Fetal Thymus	thymus
14	chr6:14768000-14770400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:14768000-14770400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:14768000-14785200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:14768200-14770400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:14768200-14770400	Weak transcription	NHDF-Ad	bronchial
19	chr6:14768200-14770600	Weak transcription	Ovary	ovary
20	chr6:14768200-14770800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:14768200-14770800	Weak transcription	Fetal Stomach	stomach
22	chr6:14768200-14771000	Weak transcription	Right Atrium	heart
23	chr6:14768200-14771800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:14768200-14772400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:14768400-14769800	Weak transcription	K562	blood
26	chr6:14768400-14770400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:14768400-14770600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:14768400-14771000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:14768800-14772400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:14768800-14775600	Weak transcription	Gastric	stomach
31	chr6:14769000-14770800	Weak transcription	Monocytes-CD14+_RO01746	blood

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