Variant report

Variant	nsv543932
Chromosome Location	chr19:20053658-20592867
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2657)
CpG islands
(count:3177)
Chromatin interactive
region (count:25)
LncRNA
region (count:62)
Mature miRNA
region (count: 2)
miRNA target
sites (count:0)

(count:2657 , 50 per page) page: 1 2 3 4 5 6 7 ... 54

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:20162795-20163547	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:20103566-20103765	HepG2	liver:	n/a	n/a
3	ARID3A	chr19:20150099-20150414	HepG2	liver:	n/a	n/a
4	ARID3A	chr19:20277796-20277995	HepG2	liver:	n/a	n/a
5	ATF1	chr19:20054705-20055077	K562	blood:	n/a	n/a
6	ATF1	chr19:20349244-20349443	K562	blood:	n/a	n/a
7	ATF1	chr19:20289866-20289929	K562	blood:	n/a	n/a
8	ATF1	chr19:20162792-20163523	K562	blood:	n/a	n/a
9	ATF1	chr19:20153260-20153552	K562	blood:	n/a	n/a
10	ATF1	chr19:20357835-20358030	K562	blood:	n/a	n/a
11	ATF1	chr19:20277755-20278020	K562	blood:	n/a	n/a
12	ATF1	chr19:20344010-20344175	K562	blood:	n/a	n/a
13	ATF2	chr19:20162692-20163573	H1-hESC	embryonic stem cell:	n/a	n/a
14	ATF2	chr19:20278020-20278358	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF2	chr19:20348954-20349352	H1-hESC	embryonic stem cell:	n/a	n/a
16	ATF2	chr19:20193391-20193678	H1-hESC	embryonic stem cell:	n/a	n/a
17	ATF2	chr19:20067472-20067936	H1-hESC	embryonic stem cell:	n/a	n/a
18	ATF2	chr19:20213875-20214282	H1-hESC	embryonic stem cell:	n/a	n/a
19	ATF3	chr19:20188548-20188771	H1-hESC	embryonic stem cell:	n/a	n/a
20	BACH1	chr19:20111633-20111647	K562	blood:	n/a	n/a
21	BACH1	chr19:20478616-20479240	H1-hESC	embryonic stem cell:	n/a	n/a
22	BACH1	chr19:20349018-20349218	H1-hESC	embryonic stem cell:	n/a	n/a
23	BACH1	chr19:20149962-20150229	H1-hESC	embryonic stem cell:	n/a	n/a
24	BACH1	chr19:20213028-20213042	H1-hESC	embryonic stem cell:	n/a	n/a
25	BATF	chr19:20169489-20169738	GM12878	blood:	n/a	chr19:20169641-20169652 chr19:20169642-20169652
26	BATF	chr19:20461481-20461636	GM12878	blood:	n/a	n/a
27	BATF	chr19:20071227-20071388	GM12878	blood:	n/a	n/a
28	BATF	chr19:20290881-20291101	GM12878	blood:	n/a	chr19:20291013-20291024 chr19:20291014-20291024
29	BATF	chr19:20169491-20169839	GM12878	blood:	n/a	chr19:20169641-20169652 chr19:20169642-20169652
30	BATF	chr19:20272241-20272396	GM12878	blood:	n/a	n/a
31	BATF	chr19:20460030-20460189	GM12878	blood:	n/a	chr19:20460120-20460131 chr19:20460121-20460131
32	BATF	chr19:20290857-20291100	GM12878	blood:	n/a	chr19:20291013-20291024 chr19:20291014-20291024
33	BATF	chr19:20172606-20172805	GM12878	blood:	n/a	n/a
34	BATF	chr19:20461475-20461637	GM12878	blood:	n/a	n/a
35	BHLHE40	chr19:20343872-20344192	K562	blood:	n/a	n/a
36	BHLHE40	chr19:20070163-20070165	K562	blood:	n/a	n/a
37	BHLHE40	chr19:20471668-20471688	K562	blood:	n/a	n/a
38	BHLHE40	chr19:20163508-20163708	GM12878	blood:	n/a	n/a
39	BHLHE40	chr19:20162803-20163166	K562	blood:	n/a	n/a
40	BRCA1	chr19:20162632-20162998	HepG2	liver:	n/a	n/a
41	BRCA1	chr19:20328741-20328829	H1-hESC	embryonic stem cell:	n/a	n/a
42	BRCA1	chr19:20426599-20426652	GM12878	blood:	n/a	n/a
43	BRCA1	chr19:20149987-20150214	H1-hESC	embryonic stem cell:	n/a	n/a
44	BRCA1	chr19:20278082-20278233	H1-hESC	embryonic stem cell:	n/a	n/a
45	BRCA1	chr19:20348754-20348954	H1-hESC	embryonic stem cell:	n/a	n/a
46	CBX3	chr19:20077721-20077986	K562	blood:	n/a	n/a
47	CBX3	chr19:20077683-20078014	K562	blood:	n/a	n/a
48	CBX3	chr19:20069962-20070297	K562	blood:	n/a	n/a
49	CCNT2	chr19:20054515-20055058	K562	blood:	n/a	n/a
50	CEBPB	chr19:20296997-20297365	K562	blood:	n/a	chr19:20297167-20297178

(count:3177 , 50 per page) page: 1 2 3 4 5 6 7 ... 64

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:20187307-20187357	HRE	kidney:	n/a
2	chr19:20278144-20278194	GM19239	blood:	n/a
3	chr19:20349252-20349302	PFSK-1	brain:	n/a
4	chr19:20150441-20150491	CMK	blood:	n/a
5	chr19:20162840-20162890	Hela-S3	cervix:	n/a
6	chr19:20187307-20187357	HRE	kidney:	n/a
7	chr19:20278144-20278194	GM19239	blood:	n/a
8	chr19:20349252-20349302	PFSK-1	brain:	n/a
9	chr19:20150441-20150491	CMK	blood:	n/a
10	chr19:20162840-20162890	Hela-S3	cervix:	n/a
11	chr19:20150317-20150367	AG04450	lung:	fetal
12	chr19:20149831-20149881	AG04449	skin:	fetal
13	chr19:20150334-20150384	ProgFib	skin:	n/a
14	chr19:20278051-20278101	U87	brain:	n/a
15	chr19:20278051-20278101	HCM	heart:	n/a
16	chr19:20349303-20349353	BE2_C	brain:	n/a
17	chr19:20187337-20187387	AoSMC	blood vessel:	n/a
18	chr19:20585212-20585262	SAEC	small airway:	n/a
19	chr19:20162840-20162890	AG04450	lung:	fetal
20	chr19:20349250-20349300	HL-60	blood:	n/a
21	chr19:20278423-20278473	K562	blood:	n/a
22	chr19:20278051-20278101	BE2_C	brain:	n/a
23	chr19:20188803-20188853	AG09309	skin:	n/a
24	chr19:20163542-20163592	BJ	skin:	n/a
25	chr19:20576478-20576528	ProgFib	skin:	n/a
26	chr19:20147046-20147096	Jurkat	blood:	n/a
27	chr19:20149886-20149936	A549	lung:	n/a
28	chr19:20369061-20369111	HRCEpiC	kidney:	n/a
29	chr19:20163138-20163188	NHBE	bronchial:	n/a
30	chr19:20163542-20163592	HUVEC	blood vessel:	n/a
31	chr19:20369061-20369111	RPTEC	kidney:	n/a
32	chr19:20149684-20149734	PrEC	prostate:	n/a
33	chr19:20150242-20150292	HEK293	kidney:	embryo
34	chr19:20278015-20278065	NT2-D1	testis:	n/a
35	chr19:20150159-20150209	GM12892	blood:	n/a
36	chr19:20187307-20187357	HPAEpiC	pulmonary alveolar:	n/a
37	chr19:20278015-20278065	HCM	heart:	n/a
38	chr19:20150334-20150384	HAEpiC	amniotic membrane:	n/a
39	chr19:20163542-20163592	GM19239	blood:	n/a
40	chr19:20369061-20369111	GM06990	blood:	n/a
41	chr19:20349275-20349325	SK-N-SH	brain:	n/a
42	chr19:20276916-20276966	GM12892	blood:	n/a
43	chr19:20348926-20348976	SK-N-SH_RA	brain:	n/a
44	chr19:20585206-20585256	HRPEpiC	eye:	n/a
45	chr19:20162840-20162890	LNCaP	prostate:	n/a
46	chr19:20163027-20163077	AG04449	skin:	fetal
47	chr19:20349252-20349302	SKMC	muscle:	n/a
48	chr19:20277240-20277290	AG04449	skin:	fetal
49	chr19:20162905-20162955	PANC-1	pancreas:	n/a
50	chr19:20187337-20187387	HPAEpiC	pulmonary alveolar:	n/a

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:19976102..19978027-chr19:20081868..20083854,2	K562	blood:
2	chr19:20160443..20163353-chr19:20178782..20180876,2	MCF-7	breast:
3	chr19:20161148..20163684-chr19:20228612..20230172,2	MCF-7	breast:
4	chr19:20107929..20110799-chr19:21687232..21688823,2	MCF-7	breast:
5	chr19:20142180..20144378-chr19:20148043..20150229,2	MCF-7	breast:
6	chr19:19772761..19775083-chr19:20066186..20068546,2	MCF-7	breast:
7	chr19:20142180..20144378-chr19:20148043..20150229,2	MCF-7	breast:
8	chr19:20153292..20157209-chr19:20159968..20162896,6	MCF-7	breast:
9	chr19:20125599..20128590-chr19:20148799..20150667,2	MCF-7	breast:
10	chr19:20158142..20160017-chr19:20161211..20163624,2	MCF-7	breast:
11	chr19:19886225..19889076-chr19:20160261..20164492,4	MCF-7	breast:
12	chr19:20124182..20126498-chr19:20128063..20130239,2	MCF-7	breast:
13	chr19:20048978..20051171-chr19:20052679..20055327,2	K562	blood:
14	chr19:20153292..20157209-chr19:20159968..20162896,6	MCF-7	breast:
15	chr19:20160443..20163353-chr19:20178782..20180876,2	MCF-7	breast:
16	chr19:19886850..19889020-chr19:20162387..20164184,2	MCF-7	breast:
17	chr19:20124182..20126498-chr19:20128063..20130239,2	MCF-7	breast:
18	chr19:20159294..20161641-chr19:20161675..20163278,2	MCF-7	breast:
19	chr19:20048311..20052863-chr19:20053827..20056431,4	K562	blood:
20	chr19:20158142..20160017-chr19:20161211..20163624,2	MCF-7	breast:
21	chr19:20161148..20163684-chr19:20228612..20230172,2	MCF-7	breast:
22	chr19:19743070..19745753-chr19:20069128..20070689,2	MCF-7	breast:
23	chr19:20159294..20161641-chr19:20161675..20163278,2	MCF-7	breast:
24	chr19:19887367..19888020-chr19:20162266..20162852,2	MCF-7	breast:
25	chr19:20150205..20157347-chr19:20159192..20163449,8	MCF-7	breast:

(count:62 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF682-5	chr19:20318001-20320598	NONHSAT063637
2	lnc-ZNF486-1	chr19:20358336-20358508	XLOC_012999
3	lnc-ZNF737-3	chr19:20515776-20516941	NONHSAT063653
4	lnc-ZNF506-8	chr19:20150152-20150259	NONHSAT063621
5	lnc-ZNF486-9	chr19:20588238-20588951	NONHSAT063655
6	lnc-ZNF93-1	chr19:20073928-20074273	ENSG00000267268.1
7	lnc-ZNF737-3	chr19:20591750-20591824	NR_036455
8	lnc-ZNF737-3	chr19:20486769-20486818	NONHSAT063648
9	lnc-ZNF682-3	chr19:20236354-20236592	ENSG00000267383.2
10	lnc-ZNF90-2	chr19:20173564-20174129	NONHSAT063623
11	lnc-ZNF682-3	chr19:20349097-20349240	ENSG00000267383.2
12	lnc-ZNF486-9	chr19:20578693-20579002	NONHSAT063655
13	lnc-ZNF486-9	chr19:20591746-20591845	NONHSAT063655
14	lnc-ZNF486-5	chr19:20361026-20361104	NONHSAT063644
15	lnc-ZNF682-2	chr19:20190979-20191348	NONHSAT063625
16	lnc-ZNF90-3	chr19:20144253-20144356	NONHSAT063622
17	lnc-ZNF486-8	chr19:20462311-20462888	NONHSAT063650
18	lnc-ZNF682-3	chr19:20243270-20243396	NONHSAT063631
19	lnc-ZNF90-3	chr19:20144674-20145141	NONHSAT063622
20	lnc-ZNF486-7	chr19:20188846-20188944	NONHSAT063624
21	lnc-ZNF682-3	chr19:20243270-20243396	ENSG00000267383.2
22	lnc-ZNF682-3	chr19:20338819-20339292	ENSG00000267383.2
23	lnc-ZNF93-1	chr19:20069298-20069363	ENSG00000267268.1
24	lnc-ZNF486-7	chr19:20190596-20191128	NONHSAT063624
25	lnc-ZNF682-3	chr19:20243270-20243396	ENSG00000267383.2
26	lnc-ZNF682-3	chr19:20236228-20236318	ENSG00000267383.2
27	lnc-ZNF682-3	chr19:20431995-20432114	ENSG00000267383.2
28	lnc-ZNF486-6	chr19:20378626-20379200	NONHSAT063645
29	lnc-ZNF682-2	chr19:20190627-20190757	NONHSAT063625
30	lnc-ZNF682-4	chr19:20285822-20286138	NONHSAT063634
31	lnc-ZNF682-1	chr19:20331132-20331228	ENSG00000251268
32	lnc-ZNF737-3	chr19:20591750-20591845	NONHSAT063657
33	lnc-ZNF486-3	chr19:20332678-20333272	NONHSAT063642
34	lnc-ZNF506-8	chr19:20141526-20141691	NONHSAT063621
35	lnc-ZNF90-1	chr19:20247742-20248042	NONHSAT063632
36	lnc-ZNF737-3	chr19:20519759-20519854	NONHSAT063649
37	lnc-ZNF737-3	chr19:20509467-20509847	NONHSAT063652
38	lnc-ZNF737-3	chr19:20588513-20588955	NONHSAT063657
39	lnc-ZNF737-3	chr19:20591750-20591824	NONHSAT063654
40	lnc-ZNF682-3	chr19:20349097-20349261	ENSG00000267383.2
41	lnc-ZNF737-3	chr19:20578626-20579006	NR_036455
42	lnc-ZNF737-3	chr19:20519759-20519854	NONHSAT063653
43	lnc-ZNF486-4	chr19:20231633-20232155	NONHSAT063627
44	lnc-ZNF682-4	chr19:20287656-20287872	NONHSAT063634
45	lnc-ZNF506-8	chr19:20141802-20141922	NONHSAT063621
46	lnc-ZNF682-7	chr19:20434801-20435377	NONHSAT063647
47	lnc-ZNF93-1	chr19:20067547-20067825	ENSG00000267268.1
48	lnc-ZNF486-4	chr19:20235815-20235952	NONHSAT063627
49	lnc-ZNF682-3	chr19:20262616-20262717	NONHSAT063631
50	lnc-ZNF737-3	chr19:20451177-20451910	NONHSAT063649

miRNA name	Chromosome Location	mirBase accession
hsa-miR-1270	chr19:20510129-20510151	MIMAT0005924
hsa-miR-1270	chr19:20579288-20579310	MIMAT0005924_1

No data

Variant related genes	Relation type
ZNF486	TF binding region
ENSG00000224864	TF binding region
ENSG00000269055	TF binding region
ENSG00000267771	TF binding region
MIR1270-2	TF binding region
ENSG00000240673	TF binding region
ENSG00000269154	TF binding region
ENSG00000269274	TF binding region
MIR1270-1	TF binding region
ENSG00000264441	TF binding region
ENSG00000268070	TF binding region
ENSG00000271524	TF binding region
ZNF682	TF binding region
ENSG00000270716	TF binding region
ENSG00000266609	TF binding region
ENSG00000268620	TF binding region
ENSG00000221181	TF binding region
ENSG00000267220	TF binding region
ENSG00000271638	TF binding region
ENSG00000213985	TF binding region
ENSG00000269372	TF binding region
ZNF826P	TF binding region
ENSG00000267641	TF binding region
ZNF90	TF binding region
ENSG00000271704	TF binding region
ENSG00000267383	TF binding region
ZNF486	CpG island
ENSG00000224864	CpG island
ENSG00000269055	CpG island
ENSG00000267771	CpG island
MIR1270-2	CpG island
ENSG00000240673	CpG island
ENSG00000269154	CpG island
ENSG00000269274	CpG island
MIR1270-1	CpG island
ENSG00000264441	CpG island
ENSG00000268070	CpG island
ENSG00000271524	CpG island
ZNF682	CpG island
ENSG00000270716	CpG island
ENSG00000266609	CpG island
ENSG00000268620	CpG island
ENSG00000221181	CpG island
ENSG00000267220	CpG island
ENSG00000271638	CpG island
ENSG00000213985	CpG island
ENSG00000269372	CpG island
ZNF826P	CpG island
ENSG00000267641	CpG island
ZNF90	CpG island
ENSG00000271704	CpG island
ENSG00000267383	CpG island
ENSG00000268070	chromatin interactions
ENSG00000268461	chromatin interactions
ENSG00000266904	chromatin interactions
ENSG00000256771	chromatin interactions
ENSG00000267419	chromatin interactions
ENSG00000105726	chromatin interactions
ENSG00000197013	chromatin interactions
ENSG00000197124	chromatin interactions
FXN	Mature miRNA region
ARID3B	miRNA target sites
UBAP2L	miRNA target sites

Extended variants
information (count: 19401 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:19401 , 50 per page) page: 1 2 3 4 5 6 7 ... 389

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs528542717	chr19:20053696-20053697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs146291266	chr19:20053701-20053702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs561534883	chr19:20053724-20053725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs574130195	chr19:20053761-20053762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs530623158	chr19:20053802-20053803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs115752256	chr19:20053956-20053957	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs190737210	chr19:20053967-20053968	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs80025074	chr19:20054010-20054011	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs183271000	chr19:20054040-20054041	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs8100030	chr19:20054046-20054047	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs555508728	chr19:20054058-20054059	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs569584056	chr19:20054059-20054060	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs574927669	chr19:20054069-20054070	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs537266506	chr19:20054115-20054116	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs118018885	chr19:20054162-20054163	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs577451142	chr19:20054168-20054169	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs187992895	chr19:20054177-20054178	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs559317975	chr19:20054217-20054218	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs572940979	chr19:20054219-20054220	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs541875530	chr19:20054274-20054275	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs35707766	chr19:20054282-20054283	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs561870812	chr19:20054306-20054307	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs192155556	chr19:20054318-20054319	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs184520956	chr19:20054369-20054370	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs546372615	chr19:20054501-20054502	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs143453780	chr19:20054507-20054508	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs146761051	chr19:20054554-20054555	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs546958494	chr19:20054629-20054630	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs148491058	chr19:20054650-20054651	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs528898011	chr19:20054656-20054657	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs549070277	chr19:20054724-20054725	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs568871864	chr19:20054732-20054733	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs2215915	chr19:20054746-20054747	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs187746522	chr19:20054786-20054787	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs571071758	chr19:20054787-20054788	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs539734288	chr19:20054803-20054804	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs6511061	chr19:20054823-20054824	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs371284413	chr19:20054826-20054827	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs572875281	chr19:20054953-20054954	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs541838693	chr19:20054981-20054982	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs555765761	chr19:20054984-20054985	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs4809014	chr19:20055002-20055003	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
43	rs565774754	chr19:20055033-20055034	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs145152929	chr19:20055061-20055062	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs192909720	chr19:20055066-20055067	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs564118553	chr19:20055104-20055105	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs116197500	chr19:20055127-20055128	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs184095525	chr19:20055136-20055137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs540484448	chr19:20055140-20055141	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs560470590	chr19:20055156-20055157	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21364760	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Nasopharyngeal cancer	20548289	CNVD
Schizophrenia	20967226	CNVD
Colorectal cancer	20459617	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Type 2 diabetes	21526130	CNVD
Acute myeloid leukemia	20962326	CNVD
Glioma	20126413	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Obesity	21131291	CNVD
Bipolar disorder	19214233	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Autism	20841430	CNVD
Autism	19492091	CNVD

Chromatin state (count:5769 , 50 per page) page: 1 2 3 4 5 6 7 ... 116

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:20046200-20054400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:20046200-20056200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:20050800-20054200	Weak transcription	Fetal Lung	lung
4	chr19:20051200-20054600	Weak transcription	Ovary	ovary
5	chr19:20054200-20054400	Enhancers	Fetal Lung	lung
6	chr19:20054200-20054600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr19:20054200-20055600	Enhancers	Placenta	Placenta
8	chr19:20054400-20054600	Enhancers	K562	blood
9	chr19:20054400-20054800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr19:20054400-20055000	Weak transcription	Fetal Lung	lung
11	chr19:20054600-20055200	Enhancers	Ovary	ovary
12	chr19:20054600-20055800	Flanking Active TSS	K562	blood
13	chr19:20055000-20055200	Enhancers	Fetal Lung	lung
14	chr19:20055000-20057800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
15	chr19:20055800-20056000	Active TSS	K562	blood
16	chr19:20056200-20057800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr19:20058200-20059200	ZNF genes & repeats	Dnd41	blood
18	chr19:20059200-20060400	Enhancers	Dnd41	blood
19	chr19:20064800-20065800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr19:20064800-20066000	Enhancers	Ovary	ovary
21	chr19:20067200-20067400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr19:20067200-20067400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr19:20067200-20067400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr19:20067200-20067400	Active TSS	Brain Germinal Matrix	brain
25	chr19:20067200-20067600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr19:20067200-20067600	Enhancers	Fetal Brain Male	brain
27	chr19:20067200-20067800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr19:20067200-20067800	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr19:20067200-20067800	Active TSS	Fetal Brain Female	brain
30	chr19:20067400-20067600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
31	chr19:20067400-20067600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr19:20067400-20067600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr19:20067400-20067600	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
34	chr19:20067400-20067800	Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr19:20067400-20067800	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr19:20067400-20067800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr19:20067400-20067800	Flanking Active TSS	Brain Germinal Matrix	brain
38	chr19:20067400-20067800	Enhancers	Fetal Muscle Trunk	muscle
39	chr19:20067600-20067800	Active TSS	H1 Cell Line	embryonic stem cell
40	chr19:20067600-20067800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr19:20067800-20068000	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr19:20067800-20071400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr19:20069800-20070000	Enhancers	Primary T cells fromperipheralblood	blood
44	chr19:20069800-20070200	Enhancers	Primary B cells from peripheral blood	blood
45	chr19:20069800-20070200	Active TSS	Brain Anterior Caudate	brain
46	chr19:20070000-20070200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
47	chr19:20070000-20070200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr19:20070000-20070200	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr19:20070000-20070200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr19:20070000-20070200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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