Variant report

Variant	nsv546184
Chromosome Location	chr1:47882638-47889417
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:47882103..47884059-chr1:47889283..47891446,2	K562	blood:
2	chr1:47889014..47889581-chr1:48176033..48176786,2	MCF-7	breast:
3	chr1:47885753..47888028-chr1:47889973..47892775,2	K562	blood:
4	chr1:47873301..47878358-chr1:47879948..47882876,5	K562	blood:
5	chr1:47887987..47890886-chr1:47894875..47897578,2	K562	blood:
6	chr1:47882103..47884059-chr1:47889283..47891446,2	K562	blood:
7	chr1:47887611..47892065-chr1:47895206..47901800,8	K562	blood:

Variant related genes	Relation type
ENSG00000225762	chromatin interactions
ENSG00000237424	chromatin interactions
ENSG00000186564	chromatin interactions

Extended variants
information (count: 242 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:242 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs112802909	chr1:47882690-47882691	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs80358194	chr1:47882707-47882708	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs12724260	chr1:47882761-47882762	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs527783871	chr1:47882818-47882819	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs12724403	chr1:47882845-47882846	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs12724404	chr1:47882846-47882847	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs552420470	chr1:47882885-47882886	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs571095192	chr1:47882916-47882917	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs538463445	chr1:47882926-47882927	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs387906793	chr1:47882946-47882947	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs550433635	chr1:47883016-47883017	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs386630974	chr1:47883019-47883020	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs2820969	chr1:47883024-47883025	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs554538370	chr1:47883027-47883028	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs572796508	chr1:47883153-47883154	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs533861922	chr1:47883167-47883168	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs181619150	chr1:47883168-47883169	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs528856611	chr1:47883269-47883270	Bivalent Enhancer Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs148144944	chr1:47883370-47883371	Bivalent Enhancer Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs374899294	chr1:47883373-47883374	Bivalent Enhancer Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs373095398	chr1:47883376-47883377	Bivalent Enhancer Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs74074267	chr1:47883414-47883415	Bivalent Enhancer Bivalent/Poised TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs201356601	chr1:47883422-47883423	Bivalent Enhancer Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs78460138	chr1:47883462-47883463	Bivalent Enhancer Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs34173190	chr1:47883519-47883520	Bivalent Enhancer Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs538648854	chr1:47883537-47883538	Bivalent Enhancer Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs186863282	chr1:47883658-47883659	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs568722651	chr1:47883709-47883710	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs2291197	chr1:47883769-47883770	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs112641036	chr1:47883826-47883827	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs79154012	chr1:47883910-47883911	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs373128613	chr1:47883931-47883932	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs111597986	chr1:47883960-47883961	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs573476530	chr1:47883978-47883979	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs2291198	chr1:47883983-47883984	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs534165098	chr1:47884001-47884002	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs546244746	chr1:47884025-47884026	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs140076375	chr1:47884061-47884062	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs190890095	chr1:47884066-47884067	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs552202544	chr1:47884071-47884072	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs550370385	chr1:47884095-47884096	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs568751570	chr1:47884162-47884163	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs529996979	chr1:47884228-47884229	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs11211533	chr1:47884229-47884230	Bivalent/Poised TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
45	rs566445100	chr1:47884234-47884235	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs75281543	chr1:47884259-47884260	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs182022960	chr1:47884278-47884279	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs577486110	chr1:47884302-47884303	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs570575149	chr1:47884352-47884353	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs78893536	chr1:47884415-47884416	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	17603634	CNVD
Soft tissue tumor	16732325	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Chronic myeloid leukemia	21384125	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Melanoma	17363583	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Muscle-eye-brain disease	21572526	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Neuroblastoma	21899760	CNVD
Uveal melanoma	20484589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Glioblastoma	20031968	CNVD
Leukemia	18688285	CNVD
Rett syndrome	21593744	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Meckel-Gruber syndrome	21572526	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47881000-47884800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr1:47881400-47883400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
3	chr1:47881800-47882800	Bivalent/Poised TSS	Colonic Mucosa	Colon
4	chr1:47881800-47882800	Enhancers	Gastric	stomach
5	chr1:47881800-47882800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
6	chr1:47881800-47883000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
7	chr1:47881800-47883000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:47881800-47883200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
9	chr1:47881800-47883200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
10	chr1:47881800-47883200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:47882000-47882800	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:47882000-47882800	Active TSS	HSMM	muscle
13	chr1:47882000-47883000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:47882000-47883000	Bivalent/Poised TSS	Psoas Muscle	Psoas
15	chr1:47882000-47883000	Bivalent/Poised TSS	Right Ventricle	heart
16	chr1:47882200-47882800	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
17	chr1:47882200-47882800	Bivalent Enhancer	Left Ventricle	heart
18	chr1:47882200-47882800	Flanking Active TSS	Pancreas	Pancrea
19	chr1:47882200-47882800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
20	chr1:47882200-47882800	Flanking Active TSS	Right Atrium	heart
21	chr1:47882200-47883000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:47882200-47883000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:47882200-47883000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:47882200-47883000	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
25	chr1:47882200-47883000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
26	chr1:47882400-47882800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:47882400-47882800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:47882400-47882800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:47882400-47882800	Enhancers	Lung	lung
30	chr1:47882400-47883000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
31	chr1:47882400-47883000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:47882400-47883200	Bivalent Enhancer	Esophagus	oesophagus
33	chr1:47882600-47882800	Bivalent/Poised TSS	Primary hematopoietic stem cells short term culture	blood
34	chr1:47882600-47882800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr1:47882600-47882800	Enhancers	Aorta	Aorta
36	chr1:47882600-47882800	Bivalent Enhancer	Ovary	ovary
37	chr1:47882600-47882800	Bivalent/Poised TSS	Thymus	Thymus
38	chr1:47882600-47883000	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
39	chr1:47882600-47883000	Bivalent Enhancer	Spleen	Spleen
40	chr1:47882600-47883200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:47882600-47883400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
42	chr1:47882800-47883000	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr1:47882800-47883000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:47882800-47883000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr1:47882800-47883000	Enhancers	Pancreas	Pancrea
46	chr1:47882800-47883000	Enhancers	Right Atrium	heart
47	chr1:47882800-47883000	Flanking Bivalent TSS/Enh	Thymus	Thymus
48	chr1:47882800-47883000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
49	chr1:47882800-47883200	Bivalent Enhancer	Colonic Mucosa	Colon
50	chr1:47882800-47898400	Weak transcription	Aorta	Aorta

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