Variant report

Variant	rs11211533
Chromosome Location	chr1:47884229-47884230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10157734	0.80[ASN][1000 genomes]
rs10218615	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10789509	0.80[ASN][1000 genomes]
rs10890480	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211516	0.80[ASN][1000 genomes]
rs11211526	0.80[ASN][1000 genomes]
rs11211537	0.80[ASN][1000 genomes]
rs11577236	0.80[ASN][1000 genomes]
rs11579854	0.80[ASN][1000 genomes]
rs11584518	0.80[ASN][1000 genomes]
rs11585530	1.00[CHB][hapmap]
rs11587272	0.80[ASN][1000 genomes]
rs11588964	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12065137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12080109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117686	0.80[ASN][1000 genomes]
rs12123269	0.80[ASN][1000 genomes]
rs12129259	0.80[ASN][1000 genomes]
rs12132521	0.80[ASN][1000 genomes]
rs12134888	0.80[ASN][1000 genomes]
rs12135037	0.80[ASN][1000 genomes]
rs12139700	0.80[ASN][1000 genomes]
rs12141529	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12145103	0.80[ASN][1000 genomes]
rs12718447	0.80[ASN][1000 genomes]
rs12735320	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749507	0.80[ASN][1000 genomes]
rs12751405	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12751618	0.80[ASN][1000 genomes]
rs12759377	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1572546	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103168	0.80[ASN][1000 genomes]
rs17103322	1.00[CHB][hapmap]
rs17103342	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs17370386	0.80[ASN][1000 genomes]
rs17378887	0.86[ASN][1000 genomes]
rs2097	0.80[ASN][1000 genomes]
rs2098	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs34192192	0.80[ASN][1000 genomes]
rs34979288	0.80[ASN][1000 genomes]
rs35234940	0.80[ASN][1000 genomes]
rs35601384	0.80[ASN][1000 genomes]
rs36054263	0.93[ASN][1000 genomes]
rs4480403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4481897	0.80[ASN][1000 genomes]
rs60352530	0.80[ASN][1000 genomes]
rs6665067	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6670458	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6691723	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67221389	0.80[ASN][1000 genomes]
rs67295054	0.80[ASN][1000 genomes]
rs71502303	0.80[ASN][1000 genomes]
rs7415976	0.80[ASN][1000 genomes]
rs7514213	0.80[ASN][1000 genomes]
rs7525802	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528075	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7534328	0.80[ASN][1000 genomes]
rs9725517	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871961	chr1:47875627-47912628	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv546170	chr1:47881978-47889417	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1797070	chr1:47881984-47889417	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv534956	chr1:47882277-47905486	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv534957	chr1:47882277-47907965	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv1843485	chr1:47882482-47889417	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv546184	chr1:47882638-47889417	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1001779	chr1:47884229-48111485	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11211533	GPBP1L1	cis	parietal	SCAN
rs11211533	CMPK1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47881000-47884800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr1:47882800-47898400	Weak transcription	Aorta	Aorta

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