The 2.0 version of rSNPBase

Variant report

Variant rs12080109
Chromosome Location chr1:47896425-47896426
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:21 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47882800-47898400 Weak transcription Aorta Aorta
2 chr1:47885800-47897800 Weak transcription Colonic Mucosa Colon
3 chr1:47890000-47896600 Weak transcription A549 lung
4 chr1:47890200-47897000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
5 chr1:47890200-47897200 Weak transcription K562 blood
6 chr1:47890400-47898000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr1:47890600-47897000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr1:47891000-47896600 Weak transcription Dnd41 blood
9 chr1:47891400-47896800 Weak transcription Fetal Intestine Small intestine
10 chr1:47891400-47897000 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr1:47892800-47896800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr1:47893200-47897200 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:47893600-47898200 Weak transcription Hela-S3 cervix
14 chr1:47894400-47901600 Weak transcription HepG2 liver
15 chr1:47895200-47896800 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr1:47895400-47897400 Weak transcription Spleen Spleen
17 chr1:47896000-47897400 Enhancers HMEC breast
18 chr1:47896000-47897800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr1:47896000-47898000 Enhancers NHEK skin
20 chr1:47896200-47897000 Weak transcription HSMM muscle
21 chr1:47896400-47898000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015