Variant report

Variant	rs7528075
Chromosome Location	chr1:47870271-47870272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47854429..47856200-chr1:47870226..47871822,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10157734	0.86[ASN][1000 genomes]
rs10890480	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11211505	1.00[CHB][hapmap]
rs11211512	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11211516	0.86[ASN][1000 genomes]
rs11211526	0.86[ASN][1000 genomes]
rs11211533	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11577236	0.86[ASN][1000 genomes]
rs11577960	1.00[CHB][hapmap]
rs11578360	1.00[CHB][hapmap]
rs11579854	0.86[ASN][1000 genomes]
rs11584518	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs11587272	0.86[ASN][1000 genomes]
rs12065137	0.92[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12080109	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12117686	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12123269	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs12123358	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12129259	0.86[ASN][1000 genomes]
rs12131978	1.00[CHD][hapmap]
rs12132521	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12134888	0.86[ASN][1000 genomes]
rs12135037	0.86[ASN][1000 genomes]
rs12139700	0.86[ASN][1000 genomes]
rs12141529	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12145103	0.86[ASN][1000 genomes]
rs12145974	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs12407463	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12410850	1.00[CHB][hapmap]
rs12718447	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12735320	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12749507	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs12751405	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12751618	0.86[ASN][1000 genomes]
rs12757893	0.80[ASN][1000 genomes]
rs12759377	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13374382	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs13376679	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1572546	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17103095	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17103168	0.86[ASN][1000 genomes]
rs17370386	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs17378887	0.93[ASN][1000 genomes]
rs2405787	1.00[CHB][hapmap]
rs34192192	0.86[ASN][1000 genomes]
rs34979288	0.86[ASN][1000 genomes]
rs35234940	0.86[ASN][1000 genomes]
rs35601384	0.86[ASN][1000 genomes]
rs36054263	1.00[ASN][1000 genomes]
rs4480403	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4481897	0.86[ASN][1000 genomes]
rs60352530	0.86[ASN][1000 genomes]
rs6665067	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6688804	1.00[CHB][hapmap]
rs6691723	0.91[CEU][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6698471	0.80[ASN][1000 genomes]
rs6698717	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs67221389	0.86[ASN][1000 genomes]
rs67295054	0.86[ASN][1000 genomes]
rs7415976	0.86[ASN][1000 genomes]
rs7525802	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7534328	0.86[ASN][1000 genomes]
rs9725517	0.86[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7528075	CMPK1	cis	parietal	SCAN
rs7528075	GPBP1L1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47847600-47872800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:47868800-47873800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:47869200-47872400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:47869400-47871400	Weak transcription	Placenta Amnion	Placenta Amnion

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