The 2.0 version of rSNPBase

Variant report

Variant rs17378887
Chromosome Location chr1:47847468-47847469
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47800600-47854600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:47801000-47850800 Weak transcription NHEK skin
3 chr1:47814800-47850600 Weak transcription Aorta Aorta
4 chr1:47824000-47851000 Weak transcription Stomach Mucosa stomach
5 chr1:47824000-47853800 Weak transcription Psoas Muscle Psoas
6 chr1:47827800-47854800 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr1:47832200-47854200 Weak transcription Esophagus oesophagus
8 chr1:47833200-47852000 Weak transcription Placenta Amnion Placenta Amnion
9 chr1:47833600-47854200 Weak transcription H9 Cell Line embryonic stem cell
10 chr1:47833600-47854200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr1:47834000-47847600 Strong transcription Primary T regulatory cells fromperipheralblood blood
12 chr1:47834000-47847600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr1:47834000-47849200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr1:47834000-47849200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr1:47834000-47849200 Strong transcription Dnd41 blood
16 chr1:47834000-47849400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr1:47834200-47847600 Strong transcription Primary monocytes fromperipheralblood blood
18 chr1:47834200-47847600 Strong transcription Primary T helper cells PMA-I stimulated --
19 chr1:47834200-47848000 Strong transcription HSMM muscle
20 chr1:47834200-47849200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
21 chr1:47834200-47849400 Strong transcription Duodenum Mucosa Duodenum
22 chr1:47834200-47849400 Strong transcription Rectal Mucosa Donor 29 rectum
23 chr1:47834200-47849400 Strong transcription Monocytes-CD14+_RO01746 blood
24 chr1:47834200-47850200 Strong transcription Breast Myoepithelial Primary Cells Breast
25 chr1:47835200-47853400 Weak transcription NHLF lung
26 chr1:47835200-47853600 Weak transcription Fetal Brain Male brain
27 chr1:47835400-47849800 Weak transcription Fetal Heart heart
28 chr1:47835400-47853200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr1:47836000-47850200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr1:47836400-47854400 Weak transcription Brain Cingulate Gyrus brain
31 chr1:47836600-47852800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr1:47836600-47854800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr1:47837200-47847600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:47837200-47853200 Weak transcription A549 lung
35 chr1:47839200-47849400 Strong transcription Fetal Adrenal Gland Adrenal Gland
36 chr1:47839400-47854200 Weak transcription Pancreas Pancrea
37 chr1:47839400-47854200 Weak transcription Right Ventricle heart
38 chr1:47840000-47853400 Weak transcription Fetal Intestine Small intestine
39 chr1:47840200-47854200 Weak transcription Rectal Smooth Muscle rectum
40 chr1:47840400-47848400 Strong transcription Primary B cells from cord blood blood
41 chr1:47841000-47850800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr1:47841000-47852000 Weak transcription Brain Substantia Nigra brain
43 chr1:47841400-47854200 Weak transcription Cortex derived primary cultured neurospheres brain
44 chr1:47841400-47854200 Weak transcription Brain Angular Gyrus brain
45 chr1:47841600-47849400 Weak transcription iPS-20b Cell Line embryonic stem cell
46 chr1:47841600-47850600 Weak transcription Primary neutrophils fromperipheralblood blood
47 chr1:47841600-47854800 Weak transcription Brain Hippocampus Middle brain
48 chr1:47842400-47849200 Genic enhancers K562 blood
49 chr1:47842600-47847600 Strong transcription GM12878-XiMat blood
50 chr1:47842800-47847600 Strong transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015