Variant report

Variant	nsv550528
Chromosome Location	chr10:38875290-38887589
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38875692..38876336-chr16:83942673..83943173,2	NB4	blood:

Extended variants
information (count: 2076 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:2076 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12761215	chr10:38875290-38875291	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs149643444	chr10:38875305-38875306	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs376950969	chr10:38875319-38875320	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs571640213	chr10:38875320-38875321	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs368740126	chr10:38875321-38875322	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs188844263	chr10:38875324-38875325	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs376608445	chr10:38875333-38875334	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs199529957	chr10:38875334-38875335	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs62649598	chr10:38875354-38875355	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs141585671	chr10:38875358-38875359	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs567076135	chr10:38875369-38875370	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs536036948	chr10:38875370-38875371	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs143818365	chr10:38875373-38875374	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs569598771	chr10:38875374-38875375	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs117053857	chr10:38875375-38875376	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs117414336	chr10:38875376-38875377	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs538950384	chr10:38875383-38875384	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs558236779	chr10:38875388-38875389	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs572023368	chr10:38875399-38875400	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs564790369	chr10:38875404-38875405	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs540727575	chr10:38875405-38875406	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs146227181	chr10:38875417-38875418	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs111208571	chr10:38875429-38875430	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs199720902	chr10:38875430-38875431	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs574630317	chr10:38875435-38875436	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs62640833	chr10:38875440-38875441	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs76716117	chr10:38875444-38875445	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs543228880	chr10:38875450-38875451	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs371420295	chr10:38875460-38875461	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs576782536	chr10:38875462-38875463	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs61839117	chr10:38875466-38875467	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs372615158	chr10:38875467-38875468	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs545699893	chr10:38875468-38875469	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs565096430	chr10:38875471-38875472	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs61839118	chr10:38875473-38875474	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs375665643	chr10:38875477-38875478	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs527690389	chr10:38875482-38875483	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs61839119	chr10:38875484-38875485	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs61839120	chr10:38875492-38875493	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs149155089	chr10:38875493-38875494	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs547523522	chr10:38875494-38875495	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs561039913	chr10:38875496-38875497	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs61839121	chr10:38875505-38875506	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs530165243	chr10:38875507-38875508	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs61839128	chr10:38875514-38875515	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs79785746	chr10:38875523-38875524	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs61839129	chr10:38875524-38875525	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs61839130	chr10:38875526-38875527	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs376129042	chr10:38875531-38875532	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs202132186	chr10:38875532-38875533	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:144 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38868800-38883800	ZNF genes & repeats	Gastric	stomach
2	chr10:38868800-38884200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr10:38868800-38888600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr10:38868800-38888800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:38868800-38888800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
6	chr10:38868800-38888800	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr10:38868800-38888800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr10:38868800-38888800	ZNF genes & repeats	Brain Substantia Nigra	brain
9	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr10:38868800-38888800	ZNF genes & repeats	Fetal Lung	lung
12	chr10:38868800-38888800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr10:38868800-38889000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr10:38868800-38889000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr10:38869000-38875400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
16	chr10:38869000-38875600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:38869000-38875800	ZNF genes & repeats	Colon Smooth Muscle	Colon
18	chr10:38869000-38876000	ZNF genes & repeats	Brain Hippocampus Middle	brain
19	chr10:38869000-38878600	ZNF genes & repeats	Brain Angular Gyrus	brain
20	chr10:38869000-38878800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr10:38869000-38882400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
22	chr10:38869000-38882400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
23	chr10:38869000-38882400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
24	chr10:38869000-38882400	ZNF genes & repeats	K562	blood
25	chr10:38869000-38882800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
26	chr10:38869000-38883600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
27	chr10:38869000-38883600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:38869000-38883800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:38869000-38884600	ZNF genes & repeats	Brain Anterior Caudate	brain
30	chr10:38869000-38885000	ZNF genes & repeats	GM12878-XiMat	blood
31	chr10:38869000-38885200	ZNF genes & repeats	Fetal Kidney	kidney
32	chr10:38869000-38887200	ZNF genes & repeats	Dnd41	blood
33	chr10:38869000-38888200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:38869000-38888600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:38869000-38888600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:38869000-38888600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
37	chr10:38869000-38888800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
38	chr10:38869000-38888800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
39	chr10:38869000-38888800	ZNF genes & repeats	Liver	Liver
40	chr10:38869000-38888800	ZNF genes & repeats	Fetal Brain Male	brain
41	chr10:38869000-38888800	ZNF genes & repeats	HUVEC	blood vessel
42	chr10:38869000-38889000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
43	chr10:38869000-38889000	ZNF genes & repeats	HepG2	liver
44	chr10:38869800-38875800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
45	chr10:38871000-38884200	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
46	chr10:38871600-38888600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
47	chr10:38871800-38875800	ZNF genes & repeats	Aorta	Aorta
48	chr10:38871800-38878600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
49	chr10:38872000-38882800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:38873400-38888800	ZNF genes & repeats	Fetal Heart	heart

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