Variant report

Variant	rs61839128
Chromosome Location	chr10:38875514-38875515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:87 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764202	chr10:38641508-39076221	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1048953	chr10:38645824-39074038	Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2757379	chr10:38677023-38978680	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2759744	chr10:38677023-39154935	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv895038	chr10:38678941-38890240	ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1036840	chr10:38682579-39074038	ZNF genes & repeats Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1052697	chr10:38696664-39030136	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1043781	chr10:38696664-39074038	ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv2762857	chr10:38733507-39076221	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv550422	chr10:38741777-38888745	Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv550423	chr10:38751950-39154633	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv3422361	chr10:38773902-39120597	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv550428	chr10:38774877-38881731	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv550429	chr10:38774877-38886805	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv550434	chr10:38778034-39154633	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv550443	chr10:38790276-38875947	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv550444	chr10:38790276-38882447	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	nsv550448	chr10:38792507-38885167	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	nsv550450	chr10:38794982-38888335	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv550451	chr10:38794982-38982218	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv550454	chr10:38796720-38983343	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	esv3424232	chr10:38807904-39121147	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
23	esv3434033	chr10:38868836-38892444	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv3362937	chr10:38868836-38894444	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv947863	chr10:38868836-38898870	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
26	esv2758214	chr10:38868836-39154935	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
27	esv10496	chr10:38868867-38877999	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	esv15473	chr10:38868867-38889034	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	nsv550462	chr10:38869176-38875947	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	nsv550463	chr10:38869176-38876419	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
31	nsv550464	chr10:38869176-38879257	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
32	nsv550465	chr10:38869176-38883470	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
33	nsv550466	chr10:38869176-38885167	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
34	nsv550467	chr10:38869176-38886051	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
35	nsv550468	chr10:38869176-38886805	Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
36	nsv550469	chr10:38869176-38887589	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
37	nsv550470	chr10:38869176-38888335	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
38	nsv550471	chr10:38869176-38888745	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
39	nsv550472	chr10:38869176-38936824	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
40	nsv550473	chr10:38869176-38965132	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
41	nsv550474	chr10:38869176-38970700	ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
42	nsv550475	chr10:38869176-38990755	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
43	nsv550476	chr10:38869176-39005603	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
44	nsv550477	chr10:38869176-39154633	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
45	nsv550485	chr10:38869663-38876419	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
46	nsv550486	chr10:38869663-38886805	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
47	nsv550488	chr10:38869738-38881731	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
48	nsv550490	chr10:38870218-38875947	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
49	nsv550491	chr10:38870218-39023068	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
50	nsv550492	chr10:38870648-38875947	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38868800-38883800	ZNF genes & repeats	Gastric	stomach
2	chr10:38868800-38884200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr10:38868800-38888600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr10:38868800-38888800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:38868800-38888800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
6	chr10:38868800-38888800	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr10:38868800-38888800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr10:38868800-38888800	ZNF genes & repeats	Brain Substantia Nigra	brain
9	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr10:38868800-38888800	ZNF genes & repeats	Fetal Lung	lung
12	chr10:38868800-38888800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr10:38868800-38889000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr10:38868800-38889000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr10:38869000-38875600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:38869000-38875800	ZNF genes & repeats	Colon Smooth Muscle	Colon
17	chr10:38869000-38876000	ZNF genes & repeats	Brain Hippocampus Middle	brain
18	chr10:38869000-38878600	ZNF genes & repeats	Brain Angular Gyrus	brain
19	chr10:38869000-38878800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr10:38869000-38882400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
21	chr10:38869000-38882400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
22	chr10:38869000-38882400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
23	chr10:38869000-38882400	ZNF genes & repeats	K562	blood
24	chr10:38869000-38882800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
25	chr10:38869000-38883600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
26	chr10:38869000-38883600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:38869000-38883800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:38869000-38884600	ZNF genes & repeats	Brain Anterior Caudate	brain
29	chr10:38869000-38885000	ZNF genes & repeats	GM12878-XiMat	blood
30	chr10:38869000-38885200	ZNF genes & repeats	Fetal Kidney	kidney
31	chr10:38869000-38887200	ZNF genes & repeats	Dnd41	blood
32	chr10:38869000-38888200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:38869000-38888600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr10:38869000-38888600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:38869000-38888600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
36	chr10:38869000-38888800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
37	chr10:38869000-38888800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
38	chr10:38869000-38888800	ZNF genes & repeats	Liver	Liver
39	chr10:38869000-38888800	ZNF genes & repeats	Fetal Brain Male	brain
40	chr10:38869000-38888800	ZNF genes & repeats	HUVEC	blood vessel
41	chr10:38869000-38889000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
42	chr10:38869000-38889000	ZNF genes & repeats	HepG2	liver
43	chr10:38869800-38875800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
44	chr10:38871000-38884200	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
45	chr10:38871600-38888600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
46	chr10:38871800-38875800	ZNF genes & repeats	Aorta	Aorta
47	chr10:38871800-38878600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:38872000-38882800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:38873400-38888800	ZNF genes & repeats	Fetal Heart	heart
50	chr10:38874200-38880200	Weak transcription	NHDF-Ad	bronchial

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