Variant report

Variant	nsv550603
Chromosome Location	chr10:42366669-42401249
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:42385424..42387506-chr16:88876940..88878642,2	MCF-7	breast:
2	chr1:115646794..115647295-chr10:42392648..42393148,2	MCF-7	breast:
3	chr10:42399009..42399706-chr10:42529715..42530239,2	MCF-7	breast:
4	chr10:42398850..42399487-chr10:42529302..42530228,2	MCF-7	breast:
5	chr10:42396404..42399699-chr10:42528302..42530349,4	MCF-7	breast:
6	chr10:42398870..42399833-chr14:43322802..43323708,2	MCF-7	breast:
7	chr10:42396677..42397179-chr2:92268827..92269338,2	MCF-7	breast:
8	chr1:149222942..149224601-chr10:42397745..42399854,2	MCF-7	breast:
9	chr10:42398850..42399800-chr10:42529302..42530219,2	MCF-7	breast:
10	chr10:42387191..42387693-chr16:34189725..34190226,2	MCF-7	breast:
11	chr10:42385049..42385862-chr2:89835873..89836374,2	MCF-7	breast:
12	chr10:42397869..42400416-chr19:27731046..27733513,2	MCF-7	breast:
13	chr10:42387171..42387692-chr16:33888891..33889406,2	MCF-7	breast:
14	chr10:42385048..42385927-chr20:45917973..45918793,2	MCF-7	breast:
15	chr10:42385202..42385933-chr7:149119111..149120081,2	MCF-7	breast:
16	chr10:42384702..42385548-chr19:46850298..46850828,2	MCF-7	breast:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42399130-42399193	NONHSAT012847
2	lnc-BMS1-12	chr10:42400201-42400696	NONHSAT012847
3	lnc-BMS1-12	chr10:42387203-42387475	NONHSAT012847
4	lnc-BMS1-12	chr10:42398302-42398937	NONHSAT012847
5	lnc-BMS1-12	chr10:42389851-42389943	NONHSAT012847
6	lnc-BMS1-12	chr10:42399434-42399525	NONHSAT012847
7	lnc-BMS1-12	chr10:42398139-42398174	NONHSAT012847
8	lnc-BMS1-11	chr10:42385001-42385282	NONHSAT012848
9	lnc-BMS1-12	chr10:42383750-42383799	NONHSAT012847
10	lnc-BMS1-12	chr10:42397884-42397971	NONHSAT012847
11	lnc-BMS1-12	chr10:42391195-42391205	NONHSAT012847

No data

Variant related genes	Relation type
ENSG00000206737	chromatin interactions
ENSG00000011485	chromatin interactions
ENSG00000198931	chromatin interactions
ENSG00000261842	chromatin interactions

Extended variants
information (count: 9785 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:9785 , 50 per page) page: 1 2 3 4 5 6 7 ... 196

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111153890	chr10:42366669-42366670	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs202009148	chr10:42366688-42366689	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs200942204	chr10:42366695-42366696	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs375101170	chr10:42366704-42366705	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs9731081	chr10:42366716-42366717	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs9731082	chr10:42366718-42366719	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs201533525	chr10:42366725-42366726	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs201707716	chr10:42366728-42366729	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs559106422	chr10:42366735-42366736	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs62654447	chr10:42366737-42366738	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs143696524	chr10:42366738-42366739	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs139142356	chr10:42366744-42366745	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs372172829	chr10:42366754-42366755	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs572435304	chr10:42366758-42366759	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs534972021	chr10:42366760-42366761	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs554807721	chr10:42366769-42366770	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs62654449	chr10:42366770-42366771	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs150223344	chr10:42366771-42366772	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs144417704	chr10:42366776-42366777	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs574515208	chr10:42366785-42366786	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs371032120	chr10:42366787-42366788	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs543752176	chr10:42366789-42366790	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs111137393	chr10:42366790-42366791	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs150068097	chr10:42366791-42366792	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs373082588	chr10:42366804-42366805	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs200927838	chr10:42366815-42366816	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs577256882	chr10:42366821-42366822	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs28971317	chr10:42366824-42366825	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs545725076	chr10:42366828-42366829	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs201908824	chr10:42366843-42366844	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs181780794	chr10:42366853-42366854	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs186210812	chr10:42366856-42366857	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs559475408	chr10:42366858-42366859	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs201047282	chr10:42366860-42366861	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs28971498	chr10:42366865-42366866	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs548516556	chr10:42366868-42366869	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs374218056	chr10:42366869-42366870	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs561933066	chr10:42366870-42366871	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs201712789	chr10:42366880-42366881	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs377256749	chr10:42366882-42366883	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs530533254	chr10:42366903-42366904	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs374282792	chr10:42366904-42366905	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs201743253	chr10:42366905-42366906	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs62654450	chr10:42366911-42366912	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs62654451	chr10:42366914-42366915	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs201200720	chr10:42366918-42366919	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs202095352	chr10:42366921-42366922	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs199556503	chr10:42366925-42366926	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs62654452	chr10:42366934-42366935	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs550544201	chr10:42366940-42366941	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Breast cancer	22522925	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:753 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42354800-42367200	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr10:42354800-42367200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
3	chr10:42354800-42367200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
4	chr10:42354800-42367400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr10:42354800-42367400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr10:42354800-42367400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr10:42354800-42367400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr10:42354800-42368000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:42354800-42368000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
10	chr10:42355000-42367200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:42355000-42367200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
12	chr10:42355000-42367200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
13	chr10:42355000-42367200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr10:42355000-42367200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:42355000-42367200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:42355000-42367200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:42355000-42367200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:42355000-42367200	ZNF genes & repeats	Brain Anterior Caudate	brain
19	chr10:42355000-42367200	ZNF genes & repeats	Brain Hippocampus Middle	brain
20	chr10:42355000-42367200	ZNF genes & repeats	Fetal Kidney	kidney
21	chr10:42355000-42367200	ZNF genes & repeats	Fetal Lung	lung
22	chr10:42355000-42367400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
23	chr10:42355000-42367400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
24	chr10:42355000-42367400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr10:42355000-42367400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
26	chr10:42355000-42367400	ZNF genes & repeats	Spleen	Spleen
27	chr10:42355000-42367400	ZNF genes & repeats	Dnd41	blood
28	chr10:42355000-42372200	ZNF genes & repeats	Liver	Liver
29	chr10:42360600-42367200	ZNF genes & repeats	Gastric	stomach
30	chr10:42365200-42366800	Weak transcription	NHEK	skin
31	chr10:42365400-42368800	Weak transcription	NHDF-Ad	bronchial
32	chr10:42365600-42368800	Weak transcription	Right Ventricle	heart
33	chr10:42365800-42366800	Weak transcription	Fetal Heart	heart
34	chr10:42365800-42366800	Weak transcription	K562	blood
35	chr10:42366000-42366800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:42366000-42366800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr10:42366000-42366800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr10:42366000-42366800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr10:42366000-42366800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:42366000-42366800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:42366000-42366800	Weak transcription	Thymus	Thymus
42	chr10:42366000-42366800	Weak transcription	A549	lung
43	chr10:42366200-42368800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr10:42366600-42367200	ZNF genes & repeats	Colonic Mucosa	Colon
45	chr10:42366600-42367200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
46	chr10:42366800-42367200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:42366800-42367200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:42366800-42367200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:42366800-42367200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
50	chr10:42366800-42367200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood

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