Variant report

Variant	rs200927838
Chromosome Location	chr10:42366815-42366816
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:55 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3336598	chr10:42354936-42422444	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3350084	chr10:42354936-42422444	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3342799	chr10:42354936-42422544	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1003224	chr10:42354975-42392945	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv14242	chr10:42354975-42396556	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv820572	chr10:42354975-42398230	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv4487	chr10:42355008-42382881	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
8	esv7049	chr10:42355088-42382895	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
9	esv7235	chr10:42355383-42380289	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
10	esv3331946	chr10:42355702-42380334	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
11	nsv550586	chr10:42356543-42380352	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
12	nsv550587	chr10:42356543-42381319	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
13	nsv550588	chr10:42356543-42382176	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
14	nsv437111	chr10:42356543-42386271	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv437112	chr10:42356543-42386271	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv437114	chr10:42356543-42386271	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv437115	chr10:42356543-42386271	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv550589	chr10:42356543-42388730	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv437666	chr10:42356543-42397929	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv550590	chr10:42356543-42401249	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	nsv550591	chr10:42356543-42407506	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
22	nsv550592	chr10:42356543-42421485	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
23	nsv550593	chr10:42356543-42445174	ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
24	esv3490714	chr10:42356621-42369399	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
25	esv3490715	chr10:42356621-42369399	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
26	esv7622	chr10:42356789-42379940	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
27	nsv437667	chr10:42357770-42397929	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
28	esv9480	chr10:42357963-42380297	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
29	esv8830	chr10:42357976-42380828	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
30	esv6338	chr10:42358188-42381770	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
31	esv3378675	chr10:42358284-42379797	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
32	esv3348731	chr10:42358643-42382653	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
33	esv8769	chr10:42358785-42379751	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
34	esv8665	chr10:42358796-42380608	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
35	esv2829922	chr10:42359820-42382515	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
36	nsv550594	chr10:42359820-42383019	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
37	esv9613	chr10:42361401-42380293	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
38	esv3355789	chr10:42361561-42368125	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
39	esv9515	chr10:42361995-42374303	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
40	esv8595	chr10:42362437-42380286	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
41	nsv550595	chr10:42362711-42383019	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
42	nsv550596	chr10:42362711-42467126	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
43	nsv550597	chr10:42363131-42382515	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
44	nsv550598	chr10:42363131-42401249	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
45	esv8833	chr10:42363941-42380493	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
46	esv5486	chr10:42364303-42380648	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
47	esv7641	chr10:42364753-42380289	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
48	esv5619	chr10:42364755-42380648	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
49	esv3374967	chr10:42365006-42380334	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
50	nsv550599	chr10:42365265-42382176	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42354800-42367200	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr10:42354800-42367200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
3	chr10:42354800-42367200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
4	chr10:42354800-42367400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr10:42354800-42367400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr10:42354800-42367400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr10:42354800-42367400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr10:42354800-42368000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:42354800-42368000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
10	chr10:42355000-42367200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:42355000-42367200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
12	chr10:42355000-42367200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
13	chr10:42355000-42367200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr10:42355000-42367200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:42355000-42367200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:42355000-42367200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:42355000-42367200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:42355000-42367200	ZNF genes & repeats	Brain Anterior Caudate	brain
19	chr10:42355000-42367200	ZNF genes & repeats	Brain Hippocampus Middle	brain
20	chr10:42355000-42367200	ZNF genes & repeats	Fetal Kidney	kidney
21	chr10:42355000-42367200	ZNF genes & repeats	Fetal Lung	lung
22	chr10:42355000-42367400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
23	chr10:42355000-42367400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
24	chr10:42355000-42367400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr10:42355000-42367400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
26	chr10:42355000-42367400	ZNF genes & repeats	Spleen	Spleen
27	chr10:42355000-42367400	ZNF genes & repeats	Dnd41	blood
28	chr10:42355000-42372200	ZNF genes & repeats	Liver	Liver
29	chr10:42360600-42367200	ZNF genes & repeats	Gastric	stomach
30	chr10:42365400-42368800	Weak transcription	NHDF-Ad	bronchial
31	chr10:42365600-42368800	Weak transcription	Right Ventricle	heart
32	chr10:42366200-42368800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr10:42366600-42367200	ZNF genes & repeats	Colonic Mucosa	Colon
34	chr10:42366600-42367200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
35	chr10:42366800-42367200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:42366800-42367200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:42366800-42367200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:42366800-42367200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
39	chr10:42366800-42367200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:42366800-42367200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
41	chr10:42366800-42367200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
42	chr10:42366800-42367200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
43	chr10:42366800-42367200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
44	chr10:42366800-42367200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
45	chr10:42366800-42367200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:42366800-42367200	ZNF genes & repeats	Colon Smooth Muscle	Colon
47	chr10:42366800-42367200	ZNF genes & repeats	Fetal Heart	heart
48	chr10:42366800-42367200	ZNF genes & repeats	Pancreas	Pancrea
49	chr10:42366800-42367200	ZNF genes & repeats	Small Intestine	intestine
50	chr10:42366800-42367200	ZNF genes & repeats	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links