Variant report

Variant	nsv553278
Chromosome Location	chr11:5759460-5761219
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:67 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9665780	chr11:5759460-5759461	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs553825051	chr11:5759488-5759489	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs12576875	chr11:5759509-5759510	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs77699127	chr11:5759525-5759526	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs112452271	chr11:5759540-5759541	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs577246196	chr11:5759600-5759601	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs74051094	chr11:5759613-5759614	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs76313093	chr11:5759629-5759630	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs539309471	chr11:5759640-5759641	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs76410944	chr11:5759641-5759642	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs556821903	chr11:5759658-5759659	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs202120077	chr11:5759667-5759668	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs566108501	chr11:5759680-5759681	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs533672628	chr11:5759685-5759686	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs34303893	chr11:5759704-5759705	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs150908982	chr11:5759708-5759709	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs188513236	chr11:5759729-5759730	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs574978037	chr11:5759755-5759756	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs375392721	chr11:5759768-5759769	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs546941951	chr11:5759775-5759776	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs368031780	chr11:5759777-5759778	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs576021849	chr11:5759832-5759833	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs545039503	chr11:5759835-5759836	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs558621933	chr11:5759847-5759848	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs546490856	chr11:5759859-5759860	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs571548745	chr11:5759865-5759866	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs573259393	chr11:5759867-5759868	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs540412800	chr11:5759919-5759920	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs58261157	chr11:5759997-5759998	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs74451719	chr11:5760005-5760006	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs75341493	chr11:5760006-5760007	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs529326252	chr11:5760021-5760022	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs78159603	chr11:5760040-5760041	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs369619083	chr11:5760088-5760089	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs117295829	chr11:5760143-5760144	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs541172185	chr11:5760195-5760196	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs117768268	chr11:5760201-5760202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs181324442	chr11:5760222-5760223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs12787457	chr11:5760241-5760242	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs111269875	chr11:5760297-5760298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs185201977	chr11:5760312-5760313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs564444699	chr11:5760342-5760343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs147285238	chr11:5760381-5760382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs10605800	chr11:5760391-5760392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs34408539	chr11:5760623-5760624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs533379010	chr11:5760758-5760759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs548653639	chr11:5760762-5760763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs367694438	chr11:5760792-5760793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs386372997	chr11:5760810-5760811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs71053302	chr11:5760811-5760812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Breast cancer	19432969	CNVD
Alzheimer''s disease	17576883	CNVD
Long-qt syndrome	17576883	CNVD
Emphysema	19352772	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Chordoma	18071362	CNVD
Breast cancer	16608533	CNVD
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Barrett''s syndrome	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Neuroblastoma	21124317	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Schizophrenia	21399695	CNVD
Gastric cancer	16891809	CNVD
Cancer	17160897	CNVD
Multiple myeloma	16616336	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	23613489	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5747400-5762400	Weak transcription	Left Ventricle	heart
2	chr11:5756800-5760400	Weak transcription	Ovary	ovary
3	chr11:5757400-5759800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:5757600-5760200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:5757800-5759600	Enhancers	NHDF-Ad	bronchial
6	chr11:5757800-5759600	Enhancers	Osteobl	bone
7	chr11:5757800-5759800	Enhancers	HSMMtube	muscle
8	chr11:5757800-5760200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:5758400-5759600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:5758400-5759600	Enhancers	HSMM	muscle
11	chr11:5759400-5759800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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