Variant report

Variant	nsv553478
Chromosome Location	chr11:10508938-10523476
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:461)
CpG islands
(count:61)
Chromatin interactive
region (count:13)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:461 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:10512108-10512433	HepG2	liver:	n/a	n/a
2	ARID3A	chr11:10512060-10512399	K562	blood:	n/a	n/a
3	ATF1	chr11:10512085-10512475	K562	blood:	n/a	n/a
4	ATF2	chr11:10510443-10510915	GM12878	blood:	n/a	n/a
5	ATF3	chr11:10512090-10512491	K562	blood:	n/a	chr11:10512318-10512331
6	ATF3	chr11:10512055-10512481	K562	blood:	n/a	chr11:10512318-10512331
7	ATF3	chr11:10511943-10512590	A549	lung:	n/a	chr11:10512318-10512331
8	BACH1	chr11:10511890-10512562	H1-hESC	embryonic stem cell:	n/a	chr11:10512307-10512321 chr11:10512221-10512235
9	BACH1	chr11:10511960-10512594	K562	blood:	n/a	chr11:10512307-10512321 chr11:10512221-10512235
10	BHLHE40	chr11:10512083-10512643	K562	blood:	n/a	n/a
11	BHLHE40	chr11:10510438-10510910	GM12878	blood:	n/a	n/a
12	BHLHE40	chr11:10512205-10512456	HepG2	liver:	n/a	n/a
13	BRCA1	chr11:10512007-10512592	Hela-S3	cervix:	n/a	n/a
14	BRCA1	chr11:10509856-10510103	Hela-S3	cervix:	n/a	n/a
15	BRCA1	chr11:10510832-10511090	Hela-S3	cervix:	n/a	n/a
16	CBX3	chr11:10511838-10512534	K562	blood:	n/a	n/a
17	CEBPB	chr11:10509772-10510197	Hela-S3	cervix:	n/a	n/a
18	CEBPB	chr11:10515869-10516069	IMR90	lung:	n/a	chr11:10515958-10515969
19	CEBPB	chr11:10515829-10516120	A549	lung:	n/a	chr11:10515958-10515969
20	CEBPB	chr11:10510768-10511131	Hela-S3	cervix:	n/a	n/a
21	CEBPB	chr11:10515932-10516036	Hela-S3	cervix:	n/a	chr11:10515958-10515969
22	CEBPB	chr11:10515890-10516081	HepG2	liver:	n/a	chr11:10515958-10515969
23	CEBPB	chr11:10515836-10516028	K562	blood:	n/a	chr11:10515958-10515969
24	CEBPB	chr11:10511980-10512480	Hela-S3	cervix:	n/a	n/a
25	CHD2	chr11:10509774-10510108	Hela-S3	cervix:	n/a	n/a
26	CHD2	chr11:10511967-10512668	Hela-S3	cervix:	n/a	n/a
27	CHD2	chr11:10510497-10510813	GM12878	blood:	n/a	n/a
28	CHD2	chr11:10510514-10511245	Hela-S3	cervix:	n/a	n/a
29	CREB1	chr11:10512105-10512530	A549	lung:	n/a	n/a
30	CTCF	chr11:10518308-10518371	GM19239	blood:	n/a	n/a
31	CTCF	chr11:10509720-10509870	SAEC	small airway:	n/a	n/a
32	CTCF	chr11:10521220-10521358	H1-hESC	embryonic stem cell:	n/a	n/a
33	CTCF	chr11:10512162-10512313	K562	blood:	n/a	n/a
34	CTCF	chr11:10520100-10520250	Caco-2	colon:	n/a	n/a
35	CTCF	chr11:10509596-10509847	H1-hESC	embryonic stem cell:	n/a	chr11:10509715-10509728
36	CTCF	chr11:10521841-10521925	GM19239	blood:	n/a	n/a
37	CTCF	chr11:10518301-10518416	GM12878	blood:	n/a	n/a
38	CTCF	chr11:10509660-10509810	HCT-116	colon:	n/a	chr11:10509715-10509728
39	CTCF	chr11:10521120-10521270	HEEpiC	esophagus:	n/a	n/a
40	CTCF	chr11:10521140-10521290	GM12872	blood:	n/a	n/a
41	CTCF	chr11:10509560-10509710	NHEK	skin:	n/a	n/a
42	CTCF	chr11:10509660-10509810	HBMEC	blood vessel:	n/a	chr11:10509715-10509728
43	CTCF	chr11:10509620-10509770	HCT-116	colon:	n/a	chr11:10509715-10509728
44	CTCF	chr11:10509644-10509787	H1-hESC	embryonic stem cell:	n/a	chr11:10509715-10509728
45	CTCF	chr11:10520195-10520249	GM12892	blood:	n/a	n/a
46	CTCF	chr11:10509664-10509833	NHEK	skin:	n/a	chr11:10509715-10509728
47	CTCF	chr11:10509700-10509850	HCPEpiC	choroid plexus:	n/a	chr11:10509715-10509728
48	CTCF	chr11:10520228-10520237	H1-hESC	embryonic stem cell:	n/a	n/a
49	CTCF	chr11:10514020-10514170	GM12878	blood:	n/a	n/a
50	CTCF	chr11:10509897-10510009	NHEK	skin:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:10512693-10512743	Hela-S3	cervix:	n/a
2	chr11:10512693-10512743	H1-hESC	embryonic stem cell:	embryo
3	chr11:10512693-10512743	A549	lung:	n/a
4	chr11:10512693-10512743	HNPCEpiC	eye:	n/a
5	chr11:10512693-10512743	RPTEC	kidney:	n/a
6	chr11:10512693-10512743	HCPEpiC	choroid plexus:	n/a
7	chr11:10512693-10512743	HMEC	breast:	n/a
8	chr11:10512693-10512743	PrEC	prostate:	n/a
9	chr11:10512693-10512743	T-47D	breast:	n/a
10	chr11:10512693-10512743	ovcar-3	ovarian:	n/a
11	chr11:10512693-10512743	SKMC	muscle:	n/a
12	chr11:10512693-10512743	NHDF-neo	bronchial:	n/a
13	chr11:10512693-10512743	HCT-116	colon:	n/a
14	chr11:10512693-10512743	HRCEpiC	kidney:	n/a
15	chr11:10512693-10512743	NB4	blood:	n/a
16	chr11:10512693-10512743	HUVEC	blood vessel:	n/a
17	chr11:10512693-10512743	ProgFib	skin:	n/a
18	chr11:10512693-10512743	AG09309	skin:	n/a
19	chr11:10512693-10512743	MCF10A-Er-Src	breast:	n/a
20	chr11:10512693-10512743	HIPEpiC	eye:	n/a
21	chr11:10512693-10512743	NHBE	bronchial:	n/a
22	chr11:10512693-10512743	AG10803	skin:	n/a
23	chr11:10512693-10512743	Caco-2	colon:	n/a
24	chr11:10512693-10512743	IMR90	lung:	fetal
25	chr11:10512693-10512743	NT2-D1	testis:	n/a
26	chr11:10512693-10512743	Hepatocyte	liver:	n/a
27	chr11:10512693-10512743	HRPEpiC	eye:	n/a
28	chr11:10512693-10512743	AG04450	lung:	fetal
29	chr11:10512693-10512743	HL-60	blood:	n/a
30	chr11:10512693-10512743	BJ	skin:	n/a
31	chr11:10512693-10512743	HEEpiC	esophagus:	n/a
32	chr11:10512693-10512743	HAEpiC	amniotic membrane:	n/a
33	chr11:10512693-10512743	PANC-1	pancreas:	n/a
34	chr11:10512693-10512743	SK-N-MC	brain:	n/a
35	chr11:10512693-10512743	GM12878	blood:	n/a
36	chr11:10512693-10512743	GM12891	blood:	n/a
37	chr11:10512693-10512743	K562	blood:	n/a
38	chr11:10512693-10512743	HPAEpiC	pulmonary alveolar:	n/a
39	chr11:10512693-10512743	PFSK-1	brain:	n/a
40	chr11:10512693-10512743	HCM	heart:	n/a
41	chr11:10512693-10512743	NH-A	brain:	n/a
42	chr11:10512693-10512743	MCF-7	breast:	n/a
43	chr11:10512693-10512743	LNCaP	prostate:	n/a
44	chr11:10512693-10512743	Jurkat	blood:	n/a
45	chr11:10512693-10512743	SK-N-SH	brain:	n/a
46	chr11:10512693-10512743	HepG2	liver:	n/a
47	chr11:10512693-10512743	GM12892	blood:	n/a
48	chr11:10512693-10512743	AG04449	skin:	fetal
49	chr11:10512693-10512743	BE2_C	brain:	n/a
50	chr11:10512693-10512743	CMK	blood:	n/a

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10518651..10520300-chr11:10520877..10522583,2	K562	blood:
2	chr11:10506945..10508997-chr11:10510629..10513489,3	K562	blood:
3	chr11:10506100..10507775-chr11:10516458..10519124,2	K562	blood:
4	chr11:10518651..10520300-chr11:10520877..10522583,2	K562	blood:
5	chr11:10510996..10515978-chr11:10517306..10519786,4	K562	blood:
6	chr11:10476554..10478906-chr11:10511838..10513868,2	K562	blood:
7	chr11:10506945..10508997-chr11:10510629..10513489,3	K562	blood:
8	chr11:10506302..10507922-chr11:10508210..10510559,2	K562	blood:
9	chr11:10511231..10513968-chr11:10515336..10517776,2	K562	blood:
10	chr11:10503278..10504991-chr11:10514976..10517004,2	K562	blood:
11	chr11:10511231..10513968-chr11:10515336..10517776,2	K562	blood:
12	chr11:10521947..10523857-chr11:10526425..10528003,2	K562	blood:
13	chr11:10522129..10523861-chr11:10525994..10530069,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AMPD3-3	chr11:10519406-10519665	refGeneNc_875_NR_034093

No data

Variant related genes	Relation type
AMPD3	TF binding region
AMPD3	CpG island
ENSG00000133805	chromatin interactions

Extended variants
information (count: 721 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:721 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs3802917	chr11:10508938-10508939	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs201376797	chr11:10508947-10508948	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs377648078	chr11:10508951-10508952	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs570661814	chr11:10508980-10508981	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs144295687	chr11:10509015-10509016	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs116161992	chr11:10509018-10509019	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs532726631	chr11:10509038-10509039	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs147806654	chr11:10509077-10509078	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs555385715	chr11:10509090-10509091	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs575329534	chr11:10509095-10509096	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs544491387	chr11:10509098-10509099	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs564375918	chr11:10509100-10509101	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs546618553	chr11:10509133-10509134	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs141312070	chr11:10509149-10509150	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs146989765	chr11:10509156-10509157	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs12804742	chr11:10509193-10509194	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs528566074	chr11:10509300-10509301	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs576419776	chr11:10509309-10509310	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs185712862	chr11:10509330-10509331	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs140888302	chr11:10509344-10509345	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs551823288	chr11:10509356-10509357	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs376700431	chr11:10509397-10509398	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs7101934	chr11:10509400-10509401	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs539792011	chr11:10509429-10509430	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs559067117	chr11:10509439-10509440	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs548481652	chr11:10509459-10509460	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs568640228	chr11:10509463-10509464	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs566985862	chr11:10509464-10509465	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs61292446	chr11:10509470-10509471	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs535509280	chr11:10509502-10509503	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs551512776	chr11:10509556-10509557	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs555524357	chr11:10509558-10509559	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs368722654	chr11:10509570-10509571	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs73409984	chr11:10509672-10509673	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs137886106	chr11:10509676-10509677	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs544236280	chr11:10509713-10509714	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs36119682	chr11:10509724-10509725	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs113469257	chr11:10509727-10509728	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs183752290	chr11:10509734-10509735	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs577869163	chr11:10509735-10509736	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs76956595	chr11:10509739-10509740	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs189125844	chr11:10509743-10509744	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs150181568	chr11:10509766-10509767	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs138721224	chr11:10509793-10509794	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs114134066	chr11:10509807-10509808	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs554795524	chr11:10509820-10509821	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs190731665	chr11:10509833-10509834	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs530949361	chr11:10509861-10509862	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs141991181	chr11:10509895-10509896	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs570784496	chr11:10509896-10509897	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Breast cancer	19432969	CNVD
Alzheimer''s disease	17576883	CNVD
Long-qt syndrome	17576883	CNVD
Emphysema	19352772	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Chordoma	18071362	CNVD
Breast cancer	16608533	CNVD
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Neuroblastoma	21124317	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Schizophrenia	21399695	CNVD
Gastric cancer	16891809	CNVD
Cancer	17160897	CNVD
Multiple myeloma	16616336	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Neuroblastoma	18923524	CNVD

Chromatin state (count:601 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10473200-10512000	Weak transcription	Aorta	Aorta
2	chr11:10478800-10511600	Weak transcription	Psoas Muscle	Psoas
3	chr11:10479800-10519400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:10484200-10509600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:10484200-10514800	Weak transcription	Colonic Mucosa	Colon
6	chr11:10485000-10515200	Weak transcription	Liver	Liver
7	chr11:10485800-10511600	Weak transcription	Osteobl	bone
8	chr11:10486800-10509600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:10486800-10515600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:10489000-10512600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:10494200-10510000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:10494600-10509600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr11:10495000-10509600	Strong transcription	Primary B cells from cord blood	blood
14	chr11:10495000-10528000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr11:10495200-10510800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:10495200-10530800	Strong transcription	Primary T cells from cord blood	blood
17	chr11:10495400-10509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:10495400-10511800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:10495600-10510600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:10495600-10516400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:10495800-10529800	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:10496200-10509800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:10496400-10524000	Strong transcription	Primary hematopoietic stem cells	blood
24	chr11:10496600-10529000	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr11:10498600-10511600	Weak transcription	Ovary	ovary
26	chr11:10498600-10514400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:10498800-10522000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr11:10498800-10522200	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr11:10499000-10509400	Strong transcription	Primary B cells from peripheral blood	blood
30	chr11:10499000-10509800	Weak transcription	GM12878-XiMat	blood
31	chr11:10499000-10514600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:10499200-10511600	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:10499200-10513000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr11:10499800-10509200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:10499800-10523600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:10500000-10510200	Strong transcription	Thymus	Thymus
37	chr11:10500000-10512400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:10500400-10511600	Weak transcription	HSMM	muscle
39	chr11:10500600-10511600	Weak transcription	Right Atrium	heart
40	chr11:10500800-10511600	Weak transcription	Right Ventricle	heart
41	chr11:10501200-10509800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:10501400-10512000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr11:10501600-10550600	Weak transcription	Small Intestine	intestine
44	chr11:10501800-10512400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:10502200-10522600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:10502600-10529000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:10502600-10560800	Weak transcription	Fetal Brain Male	brain
48	chr11:10503400-10509200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:10503400-10510600	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:10503600-10509200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links