Variant report

Variant	rs554795524
Chromosome Location	chr11:10509820-10509821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10506302..10507922-chr11:10508210..10510559,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv553478	chr11:10508938-10523476	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10473200-10512000	Weak transcription	Aorta	Aorta
2	chr11:10478800-10511600	Weak transcription	Psoas Muscle	Psoas
3	chr11:10479800-10519400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:10484200-10514800	Weak transcription	Colonic Mucosa	Colon
5	chr11:10485000-10515200	Weak transcription	Liver	Liver
6	chr11:10485800-10511600	Weak transcription	Osteobl	bone
7	chr11:10486800-10515600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:10489000-10512600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:10494200-10510000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:10495000-10528000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr11:10495200-10510800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:10495200-10530800	Strong transcription	Primary T cells from cord blood	blood
13	chr11:10495400-10511800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:10495600-10510600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:10495600-10516400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:10495800-10529800	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr11:10496400-10524000	Strong transcription	Primary hematopoietic stem cells	blood
18	chr11:10496600-10529000	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr11:10498600-10511600	Weak transcription	Ovary	ovary
20	chr11:10498600-10514400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:10498800-10522000	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr11:10498800-10522200	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr11:10499000-10514600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:10499200-10511600	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:10499200-10513000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr11:10499800-10523600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:10500000-10510200	Strong transcription	Thymus	Thymus
28	chr11:10500000-10512400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:10500400-10511600	Weak transcription	HSMM	muscle
30	chr11:10500600-10511600	Weak transcription	Right Atrium	heart
31	chr11:10500800-10511600	Weak transcription	Right Ventricle	heart
32	chr11:10501400-10512000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:10501600-10550600	Weak transcription	Small Intestine	intestine
34	chr11:10501800-10512400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:10502200-10522600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:10502600-10529000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr11:10502600-10560800	Weak transcription	Fetal Brain Male	brain
38	chr11:10503400-10510600	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr11:10504000-10510800	Weak transcription	K562	blood
40	chr11:10504000-10517800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr11:10504200-10511000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr11:10504600-10510600	Strong transcription	Brain Cingulate Gyrus	brain
43	chr11:10505400-10512000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:10505400-10516200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:10505600-10510600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:10505800-10510800	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr11:10506200-10510200	Strong transcription	Pancreas	Pancrea
48	chr11:10506200-10510800	Strong transcription	Dnd41	blood
49	chr11:10506400-10510200	Strong transcription	Brain Hippocampus Middle	brain
50	chr11:10507200-10511000	Genic enhancers	Fetal Thymus	thymus

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