Variant report

Variant	nsv556222
Chromosome Location	chr11:105279168-105299724
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:105290478..105293249-chr11:105293833..105296048,2	K562	blood:
2	chr11:105292508..105294409-chr11:105300295..105302519,2	K562	blood:
3	chr11:105290478..105293249-chr11:105293833..105296048,2	K562	blood:

Extended variants
information (count: 175 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:175 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1945968	chr11:105279168-105279169	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs370377236	chr11:105279187-105279188	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs189075412	chr11:105279202-105279203	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs574430291	chr11:105279295-105279296	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs77618726	chr11:105279440-105279441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs180758561	chr11:105279487-105279488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs560615071	chr11:105279546-105279547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs575220172	chr11:105279556-105279557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs374229895	chr11:105279560-105279561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs545534901	chr11:105279603-105279604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs77675118	chr11:105279605-105279606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs528261094	chr11:105279608-105279609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs148018403	chr11:105279618-105279619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs140774269	chr11:105279675-105279676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs529185297	chr11:105279707-105279708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs376208823	chr11:105279738-105279739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs550866571	chr11:105279796-105279797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs529015919	chr11:105279801-105279802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs150094622	chr11:105279832-105279833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs115711711	chr11:105279840-105279841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs35367676	chr11:105279843-105279844	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs79197043	chr11:105279874-105279875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs534386529	chr11:105279897-105279898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs187228520	chr11:105279949-105279950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs567877752	chr11:105279982-105279983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs569043071	chr11:105280004-105280005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs538129617	chr11:105280020-105280021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs374721165	chr11:105280024-105280025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs12294519	chr11:105280027-105280028	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs190455872	chr11:105280061-105280062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs181762183	chr11:105280082-105280083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs557428733	chr11:105280175-105280176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs186069467	chr11:105280177-105280178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs577901764	chr11:105280233-105280234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs190383175	chr11:105280235-105280236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs561510406	chr11:105280277-105280278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs536637179	chr11:105280308-105280309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs562545079	chr11:105280312-105280313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs533092760	chr11:105280314-105280315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs544940148	chr11:105280328-105280329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs7936610	chr11:105280333-105280334	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs544130235	chr11:105280361-105280362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs562807903	chr11:105280369-105280370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs138372725	chr11:105280382-105280383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs72981829	chr11:105280426-105280427	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs115050458	chr11:105280496-105280497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs34389497	chr11:105280516-105280517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs547005649	chr11:105280595-105280596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs7933974	chr11:105280606-105280607	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs78968901	chr11:105280658-105280659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Melanoma	17363583	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Obesity	19966786	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	17142309	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105278400-105279400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:105279400-105283400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:105283400-105283800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:105290400-105291200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:105290400-105291400	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links