Variant report

Variant	rs7936610
Chromosome Location	chr11:105280333-105280334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10750721	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10791760	0.81[EUR][1000 genomes]
rs10895815	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10895823	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10895830	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11226732	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11226749	0.83[AMR][1000 genomes]
rs12223737	0.81[EUR][1000 genomes]
rs12361867	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12806606	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1375428	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1945960	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1945976	0.81[EUR][1000 genomes]
rs2084509	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2409097	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35935092	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7108291	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv430427	chr11:105224246-105287241	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv556221	chr11:105243371-105392079	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv556222	chr11:105279168-105299724	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105279400-105283400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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