Variant report

Variant	nsv5575
Chromosome Location	chr6:161611584-161643479
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:60)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:60 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:161626132..161627999-chr6:161629270..161632132,2	K562	blood:
2	chr6:161624885..161626939-chr6:161636311..161638359,2	K562	blood:
3	chr6:161636650..161638663-chr6:161691150..161693376,2	K562	blood:
4	chr6:161591767..161595162-chr6:161620326..161624402,3	K562	blood:
5	chr6:161600837..161603020-chr6:161625885..161628074,2	K562	blood:
6	chr6:161611014..161614000-chr6:161615244..161617883,2	K562	blood:
7	chr6:161625985..161630120-chr6:161632363..161636218,4	K562	blood:
8	chr6:161614236..161616057-chr6:161618931..161621008,2	K562	blood:
9	chr6:161563822..161565499-chr6:161639180..161641581,2	K562	blood:
10	chr6:161623919..161626414-chr6:161687657..161690363,2	K562	blood:
11	chr6:161624885..161626939-chr6:161636311..161638359,2	K562	blood:
12	chr6:161607405..161609725-chr6:161623701..161625620,3	K562	blood:
13	chr6:161618563..161621478-chr6:161647109..161649124,2	K562	blood:
14	chr6:161636838..161639759-chr6:161642282..161646274,4	K562	blood:
15	chr6:161636514..161639270-chr6:161649424..161651598,2	MCF-7	breast:
16	chr6:161620599..161623170-chr6:161633953..161636399,2	K562	blood:
17	chr6:161626475..161628134-chr6:161628700..161632093,4	K562	blood:
18	chr6:161618660..161620548-chr6:161624919..161627802,2	MCF-7	breast:
19	chr6:161609604..161611614-chr6:161635622..161637386,2	K562	blood:
20	chr6:161632155..161634249-chr6:161636644..161638465,2	K562	blood:
21	chr6:161625007..161627754-chr6:161650672..161652327,2	K562	blood:
22	chr6:161626132..161627999-chr6:161629270..161632132,2	K562	blood:
23	chr6:161611014..161614000-chr6:161615244..161617883,2	K562	blood:
24	chr6:161557058..161558722-chr6:161620520..161623428,2	K562	blood:
25	chr6:161561302..161563346-chr6:161636611..161638291,2	K562	blood:
26	chr6:161626475..161628134-chr6:161628700..161632093,4	K562	blood:
27	chr6:161633927..161636817-chr6:161646220..161647804,3	K562	blood:
28	chr6:161609604..161611614-chr6:161635622..161637386,2	K562	blood:
29	chr6:161618660..161620548-chr6:161624919..161627802,2	MCF-7	breast:
30	chr6:161605475..161607777-chr6:161609671..161612543,2	K562	blood:
31	chr6:161426329..161428066-chr6:161624454..161626493,2	K562	blood:
32	chr6:161625985..161630120-chr6:161632363..161636218,4	K562	blood:
33	chr6:161633305..161636291-chr6:161657076..161658603,2	K562	blood:
34	chr6:161618614..161620320-chr6:161789402..161791597,2	K562	blood:
35	chr6:161586142..161588343-chr6:161615417..161617358,2	MCF-7	breast:
36	chr6:161640886..161642499-chr6:161645265..161647234,2	K562	blood:
37	chr6:161617911..161620074-chr6:161631993..161634428,2	K562	blood:
38	chr6:161626836..161629004-chr6:161638772..161642126,3	K562	blood:
39	chr6:161608508..161611578-chr6:161612848..161615127,3	K562	blood:
40	chr6:161638711..161640555-chr6:161647734..161649604,2	K562	blood:
41	chr6:161641039..161643585-chr6:161647425..161650031,3	K562	blood:
42	chr6:161626836..161629004-chr6:161638772..161642126,3	K562	blood:
43	chr6:161625591..161627830-chr6:161643657..161645730,2	K562	blood:
44	chr6:161468713..161471223-chr6:161633805..161635902,2	K562	blood:
45	chr6:161636838..161639759-chr6:161642282..161646274,4	K562	blood:
46	chr6:161421006..161425101-chr6:161625177..161629259,4	K562	blood:
47	chr6:161614236..161616057-chr6:161618931..161621008,2	K562	blood:
48	chr6:161607404..161608977-chr6:161612196..161613935,2	K562	blood:
49	chr6:161602471..161604223-chr6:161623568..161625542,2	MCF-7	breast:
50	chr6:161620599..161623170-chr6:161633953..161636399,2	K562	blood:

No data

Extended variants
information (count: 1229 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:1229 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200090206	chr6:161611617-161611618	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs200848078	chr6:161611618-161611619	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs367923844	chr6:161611619-161611620	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs11339502	chr6:161611620-161611621	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs573087264	chr6:161611631-161611632	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs397888605	chr6:161611636-161611637	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs544941050	chr6:161611683-161611684	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs79825532	chr6:161611742-161611743	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs147295762	chr6:161611756-161611757	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs140952214	chr6:161611769-161611770	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs7768085	chr6:161611812-161611813	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs572970735	chr6:161611830-161611831	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs377227733	chr6:161611855-161611856	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs529785393	chr6:161611882-161611883	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs539605262	chr6:161611911-161611912	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs557972719	chr6:161611966-161611967	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs368963756	chr6:161612060-161612061	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs7744842	chr6:161612092-161612093	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs566392754	chr6:161612146-161612147	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs113219482	chr6:161612167-161612168	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs144922847	chr6:161612202-161612203	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs9458147	chr6:161612203-161612204	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs35893564	chr6:161612204-161612205	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs137962777	chr6:161612220-161612221	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs184451383	chr6:161612226-161612227	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs1040723	chr6:161612303-161612304	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs188811925	chr6:161612341-161612342	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs182483661	chr6:161612439-161612440	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs534078079	chr6:161612458-161612459	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs554125238	chr6:161612559-161612560	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs150915792	chr6:161612593-161612594	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs76672673	chr6:161612598-161612599	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs544855701	chr6:161612617-161612618	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs564857620	chr6:161612633-161612634	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs575061070	chr6:161612652-161612653	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs543987177	chr6:161612667-161612668	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs560954199	chr6:161612710-161612711	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs113090869	chr6:161612740-161612741	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs185389090	chr6:161612838-161612839	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs529794370	chr6:161612871-161612872	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs539995945	chr6:161612894-161612895	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs189505674	chr6:161612911-161612912	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs532149471	chr6:161612924-161612925	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs552878779	chr6:161612929-161612930	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs569589674	chr6:161612943-161612944	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs35551110	chr6:161613030-161613031	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs532082065	chr6:161613053-161613054	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs113602351	chr6:161613066-161613067	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs11970102	chr6:161613067-161613068	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs553024962	chr6:161613068-161613069	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	20164920	CNVD

Chromatin state (count:685 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161585600-161626000	Weak transcription	Right Atrium	heart
2	chr6:161590000-161611600	Weak transcription	HSMMtube	muscle
3	chr6:161591400-161626200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:161591600-161615400	Weak transcription	Fetal Heart	heart
5	chr6:161599800-161647600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:161600400-161619400	Weak transcription	Fetal Lung	lung
7	chr6:161600400-161626000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:161600600-161613000	Weak transcription	Primary B cells from cord blood	blood
9	chr6:161600600-161613800	Weak transcription	Fetal Brain Female	brain
10	chr6:161601400-161636200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:161602000-161613800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:161602000-161619400	Weak transcription	Brain Germinal Matrix	brain
13	chr6:161602400-161613800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:161602800-161618600	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:161602800-161626000	Weak transcription	Gastric	stomach
16	chr6:161605200-161612600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:161606200-161615400	Weak transcription	Fetal Kidney	kidney
18	chr6:161607600-161612200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:161607600-161621400	Weak transcription	Adipose Nuclei	Adipose
20	chr6:161607800-161613800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:161607800-161619200	Weak transcription	NHLF	lung
22	chr6:161607800-161619400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:161607800-161619400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:161607800-161629800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:161607800-161644200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:161608000-161612000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:161608000-161612600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:161608000-161636000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:161608400-161611600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:161608400-161612600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:161608400-161612800	Weak transcription	NH-A	brain
32	chr6:161608400-161613400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:161608400-161613800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:161608400-161616400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:161609800-161612800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:161610000-161615400	Weak transcription	Fetal Brain Male	brain
37	chr6:161610200-161612200	Enhancers	Brain Angular Gyrus	brain
38	chr6:161610200-161612800	Enhancers	Brain Cingulate Gyrus	brain
39	chr6:161610200-161613000	Enhancers	Brain Substantia Nigra	brain
40	chr6:161610400-161615400	Weak transcription	Esophagus	oesophagus
41	chr6:161610600-161612200	Weak transcription	Lung	lung
42	chr6:161610600-161613800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:161610600-161621800	Weak transcription	Primary T cells from cord blood	blood
44	chr6:161610600-161626000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:161610600-161635800	Weak transcription	Ovary	ovary
46	chr6:161610600-161638000	Weak transcription	Aorta	Aorta
47	chr6:161610800-161613800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:161610800-161613800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr6:161610800-161620400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:161610800-161625600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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