Variant report

Variant	rs7744842
Chromosome Location	chr6:161612092-161612093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161611014..161614000-chr6:161615244..161617883,2	K562	blood:
2	chr6:161605475..161607777-chr6:161609671..161612543,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1040724	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10499315	1.00[CEU][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10499316	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961712	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970102	0.85[EUR][1000 genomes]
rs13191415	1.00[CEU][hapmap]
rs13192827	1.00[CEU][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13193634	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs13194878	0.99[EUR][1000 genomes]
rs13212679	0.93[EUR][1000 genomes]
rs13215186	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13219494	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13220357	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16892284	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16892303	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs17537799	0.83[EUR][1000 genomes]
rs17626731	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs34620502	0.99[EUR][1000 genomes]
rs35180185	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35267977	0.99[EUR][1000 genomes]
rs35505620	1.00[EUR][1000 genomes]
rs35727114	0.93[EUR][1000 genomes]
rs36030076	0.93[EUR][1000 genomes]
rs4314476	0.83[EUR][1000 genomes]
rs71565796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71565797	0.99[EUR][1000 genomes]
rs746731	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs7747618	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7751159	1.00[CEU][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7756321	1.00[CEU][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7758121	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7767737	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs7770491	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7771961	1.00[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458149	1.00[CEU][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv5575	chr6:161611584-161643479	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161585600-161626000	Weak transcription	Right Atrium	heart
2	chr6:161591400-161626200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:161591600-161615400	Weak transcription	Fetal Heart	heart
4	chr6:161599800-161647600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:161600400-161619400	Weak transcription	Fetal Lung	lung
6	chr6:161600400-161626000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:161600600-161613000	Weak transcription	Primary B cells from cord blood	blood
8	chr6:161600600-161613800	Weak transcription	Fetal Brain Female	brain
9	chr6:161601400-161636200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:161602000-161613800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:161602000-161619400	Weak transcription	Brain Germinal Matrix	brain
12	chr6:161602400-161613800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:161602800-161618600	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:161602800-161626000	Weak transcription	Gastric	stomach
15	chr6:161605200-161612600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:161606200-161615400	Weak transcription	Fetal Kidney	kidney
17	chr6:161607600-161612200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:161607600-161621400	Weak transcription	Adipose Nuclei	Adipose
19	chr6:161607800-161613800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:161607800-161619200	Weak transcription	NHLF	lung
21	chr6:161607800-161619400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:161607800-161619400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:161607800-161629800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:161607800-161644200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:161608000-161612600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:161608000-161636000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:161608400-161612600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:161608400-161612800	Weak transcription	NH-A	brain
29	chr6:161608400-161613400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:161608400-161613800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:161608400-161616400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:161609800-161612800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:161610000-161615400	Weak transcription	Fetal Brain Male	brain
34	chr6:161610200-161612200	Enhancers	Brain Angular Gyrus	brain
35	chr6:161610200-161612800	Enhancers	Brain Cingulate Gyrus	brain
36	chr6:161610200-161613000	Enhancers	Brain Substantia Nigra	brain
37	chr6:161610400-161615400	Weak transcription	Esophagus	oesophagus
38	chr6:161610600-161612200	Weak transcription	Lung	lung
39	chr6:161610600-161613800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:161610600-161621800	Weak transcription	Primary T cells from cord blood	blood
41	chr6:161610600-161626000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:161610600-161635800	Weak transcription	Ovary	ovary
43	chr6:161610600-161638000	Weak transcription	Aorta	Aorta
44	chr6:161610800-161613800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr6:161610800-161613800	Weak transcription	Fetal Muscle Trunk	muscle
46	chr6:161610800-161620400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:161610800-161625600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:161611000-161612200	Weak transcription	Brain Anterior Caudate	brain
49	chr6:161611000-161613800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:161611000-161637000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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