Variant report

Variant	rs13212679
Chromosome Location	chr6:161636962-161636963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:161624885..161626939-chr6:161636311..161638359,2	K562	blood:
2	chr6:161636838..161639759-chr6:161642282..161646274,4	K562	blood:
3	chr6:161636650..161638663-chr6:161691150..161693376,2	K562	blood:
4	chr6:161636512..161638761-chr6:161658440..161660268,2	K562	blood:
5	chr6:161632155..161634249-chr6:161636644..161638465,2	K562	blood:
6	chr6:161609604..161611614-chr6:161635622..161637386,2	K562	blood:
7	chr6:161561302..161563346-chr6:161636611..161638291,2	K562	blood:
8	chr6:161586766..161590077-chr6:161636291..161640021,3	K562	blood:
9	chr6:161636514..161639270-chr6:161649424..161651598,2	MCF-7	breast:

No data

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10499315	0.93[EUR][1000 genomes]
rs10499316	0.93[EUR][1000 genomes]
rs11961712	0.93[EUR][1000 genomes]
rs13192827	0.91[EUR][1000 genomes]
rs13193634	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13194878	0.94[EUR][1000 genomes]
rs13215186	0.93[EUR][1000 genomes]
rs13219494	0.93[EUR][1000 genomes]
rs13220357	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16892284	0.90[EUR][1000 genomes]
rs16892303	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17626731	0.93[EUR][1000 genomes]
rs34620502	0.94[EUR][1000 genomes]
rs35180185	0.93[EUR][1000 genomes]
rs35267977	0.94[EUR][1000 genomes]
rs35505620	0.93[EUR][1000 genomes]
rs35727114	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36030076	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71565796	0.93[EUR][1000 genomes]
rs71565797	0.94[EUR][1000 genomes]
rs7744842	0.93[EUR][1000 genomes]
rs7747618	0.91[EUR][1000 genomes]
rs7751159	0.91[EUR][1000 genomes]
rs7756321	0.91[EUR][1000 genomes]
rs7758121	0.93[EUR][1000 genomes]
rs7767737	0.94[EUR][1000 genomes]
rs7770491	0.91[EUR][1000 genomes]
rs7771961	0.93[EUR][1000 genomes]
rs9458149	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv5575	chr6:161611584-161643479	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv886818	chr6:161629323-161723705	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161599800-161647600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:161607800-161644200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:161610600-161638000	Weak transcription	Aorta	Aorta
4	chr6:161611000-161637000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:161622800-161638200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:161626400-161638000	Weak transcription	Lung	lung
7	chr6:161626400-161646600	Weak transcription	Left Ventricle	heart
8	chr6:161628200-161638600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:161628600-161637200	Weak transcription	HSMM	muscle
10	chr6:161633200-161637800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:161634200-161637000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:161634200-161649800	Weak transcription	Pancreas	Pancrea
13	chr6:161635000-161638600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr6:161635200-161637200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:161635200-161638200	Weak transcription	Esophagus	oesophagus
16	chr6:161635200-161639800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
17	chr6:161635400-161637000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:161635400-161643800	Weak transcription	Spleen	Spleen
19	chr6:161635600-161638000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:161635800-161637200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:161635800-161637400	Enhancers	Osteobl	bone
22	chr6:161635800-161637600	Enhancers	NH-A	brain
23	chr6:161635800-161638000	Weak transcription	Right Atrium	heart
24	chr6:161635800-161639400	Weak transcription	Fetal Heart	heart
25	chr6:161636000-161637000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
26	chr6:161636000-161637000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr6:161636000-161637000	Enhancers	Colon Smooth Muscle	Colon
28	chr6:161636000-161637400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
29	chr6:161636000-161638200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:161636000-161639600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:161636000-161639800	Enhancers	Brain Cingulate Gyrus	brain
32	chr6:161636000-161646800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:161636200-161637000	Transcr. at gene 5' and 3'	K562	blood
34	chr6:161636200-161637200	Enhancers	Brain Angular Gyrus	brain
35	chr6:161636200-161637600	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr6:161636200-161638200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
37	chr6:161636200-161638600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:161636200-161638600	Enhancers	Brain Hippocampus Middle	brain
39	chr6:161636200-161639000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr6:161636200-161640000	Enhancers	Brain Substantia Nigra	brain
41	chr6:161636200-161647800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr6:161636400-161637000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
43	chr6:161636400-161637000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:161636400-161637200	ZNF genes & repeats	Fetal Lung	lung
45	chr6:161636400-161637200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
46	chr6:161636400-161638000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:161636400-161639200	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr6:161636400-161639400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:161636400-161639400	Strong transcription	Primary T cells from cord blood	blood
50	chr6:161636400-161639400	Enhancers	Brain Anterior Caudate	brain

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