Variant report

Variant	rs36030076
Chromosome Location	chr6:161633775-161633776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161625985..161630120-chr6:161632363..161636218,4	K562	blood:
2	chr6:161633305..161636291-chr6:161657076..161658603,2	K562	blood:
3	chr6:161632155..161634249-chr6:161636644..161638465,2	K562	blood:
4	chr6:161617911..161620074-chr6:161631993..161634428,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10499315	0.93[EUR][1000 genomes]
rs10499316	0.93[EUR][1000 genomes]
rs11961712	0.93[EUR][1000 genomes]
rs13192827	0.91[EUR][1000 genomes]
rs13193634	0.94[EUR][1000 genomes]
rs13194878	0.94[EUR][1000 genomes]
rs13212679	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13215186	0.93[EUR][1000 genomes]
rs13219494	0.93[EUR][1000 genomes]
rs13220357	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16892284	0.90[EUR][1000 genomes]
rs16892303	0.94[EUR][1000 genomes]
rs17626731	0.93[EUR][1000 genomes]
rs34620502	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35180185	0.93[EUR][1000 genomes]
rs35267977	0.94[EUR][1000 genomes]
rs35505620	0.93[EUR][1000 genomes]
rs35727114	1.00[EUR][1000 genomes]
rs71565796	0.93[EUR][1000 genomes]
rs71565797	0.94[EUR][1000 genomes]
rs7744842	0.93[EUR][1000 genomes]
rs7747618	0.91[EUR][1000 genomes]
rs7751159	0.91[EUR][1000 genomes]
rs7756321	0.91[EUR][1000 genomes]
rs7758121	0.93[EUR][1000 genomes]
rs7767737	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7770491	0.91[EUR][1000 genomes]
rs7771961	0.93[EUR][1000 genomes]
rs9458149	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv5575	chr6:161611584-161643479	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv886818	chr6:161629323-161723705	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161599800-161647600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:161601400-161636200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:161607800-161644200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:161608000-161636000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:161610600-161635800	Weak transcription	Ovary	ovary
6	chr6:161610600-161638000	Weak transcription	Aorta	Aorta
7	chr6:161611000-161637000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:161622800-161638200	Weak transcription	Primary B cells from cord blood	blood
9	chr6:161623200-161636400	Weak transcription	Primary T cells from cord blood	blood
10	chr6:161626400-161638000	Weak transcription	Lung	lung
11	chr6:161626400-161646600	Weak transcription	Left Ventricle	heart
12	chr6:161628200-161638600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:161628600-161637200	Weak transcription	HSMM	muscle
14	chr6:161630000-161635400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr6:161630400-161636200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:161630600-161636000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:161630800-161634000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:161630800-161636200	Weak transcription	Brain Angular Gyrus	brain
19	chr6:161630800-161636200	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:161630800-161636400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:161631000-161636400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:161631800-161634200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
23	chr6:161632000-161633800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:161632000-161634200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:161632200-161635000	Weak transcription	K562	blood
26	chr6:161632600-161633800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:161632800-161634200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
28	chr6:161632800-161634200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
29	chr6:161632800-161634200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:161632800-161635400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
31	chr6:161633000-161636200	Weak transcription	Brain Substantia Nigra	brain
32	chr6:161633200-161637800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:161633400-161633800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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