Variant report
| Variant | nsv558616 |
|---|---|
| Chromosome Location | chr12:40874860-40875351 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-MUC19-1 | chr12:40872855-40879178 | NONHSAT027728 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs140686738 | chr12:40874954-40874955 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs373215455 | chr12:40875024-40875025 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs145895653 | chr12:40875053-40875054 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs138494529 | chr12:40875057-40875058 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 5 | rs577317561 | chr12:40875126-40875127 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 6 | rs544384258 | chr12:40875135-40875136 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs2405077 | chr12:40875150-40875151 | Weak transcription | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 8 | rs552735630 | chr12:40875171-40875172 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 9 | rs78967590 | chr12:40875172-40875173 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 10 | rs112784238 | chr12:40875188-40875189 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 11 | rs117875457 | chr12:40875193-40875194 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 12 | rs560796758 | chr12:40875228-40875229 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 13 | rs527877753 | chr12:40875250-40875251 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 14 | rs552850110 | chr12:40875308-40875309 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 15 | rs2251431 | chr12:40875351-40875352 | Weak transcription | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
Variant related diseases (count:58)
| Disease | PMID | Source |
|---|---|---|
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Seminomas | 18059402 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Lung cancer | 20668451 | CNVD |
| Breast cancer | 20668451 | CNVD |
| Cancer | 20668451 | CNVD |
| Ovarian cancer | 20668451 | CNVD |
| Pancreas cancer | 20668451 | CNVD |
| Prostate cancer | 20668451 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Malaria | 21533027 | CNVD |
| Chronic lymphocytic leukemia | 22228453 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Chronic lymphocytic leukemia | 21670202 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Autism | 22495311 | CNVD |
| Cancer | 20164919 | CNVD |
| Neurodevelopmental disorder | 22521361 | CNVD |
| Acute lymphoblastic leukemia | 21390130 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Renal cell carcinoma | 18194544 | CNVD |
| Breast cancer | 21949216 | CNVD |
| Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Cancer | 21637783 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| Burkitt''s lymphoma | 18698080 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Gastrointestinal stromal cancer | 20470368 | CNVD |
| Adenoid cystic carcinoma | 17372589 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Cancer | 21183584 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| Lissencephaly | 21572526 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Autism | 20858243 | CNVD |
| Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
| Adenoid cystic carcinoma | 18698036 | CNVD |
| Breast cancer | 19602461 | CNVD |
| Breast cancer | 17899364 | CNVD |
| Cancer | 20164920 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:40873800-40875800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
